Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g1965 ATGGATAATGCAAACGAAGCATCATCCTCCTTGAGTTTTGCATCATCTTACTTATCAAATGGGTCAATTAATCCCAACATATTTGCCTGCACTAGCCACGAGCATGTGGCAACTCTTGAAAATTTGAGCCTCAGTAAGTTGAGTGGAAGCCTTGAGAAGCTTTTGATAGATCCTGAATATGACTATAGTGATGTTGATATTGTTGTTGAGGGAAAACCTGTGGGTGTTCATAGGTGTATATTGGCTTCACGTAGTCAGTTTTTTCATGAACTTTTTAAGAAAGAAAATGATGGCTCAGTGAAGGAAGGCAAGCCAAAGTATCTCATGTCAGACCTGGTGCCTTATGGCTTCGTTGGACACGAAGCATTCTGTGTTTTCTTGCATTATTTGTATACTGGAAAGCTGAAGGCGTCACCCCCTCAAGTATCAACATGTGTTGATGAATCATGTGTGCATGATGCATGCTGGCCTGCTATTAATTATGCTTTAGAGCTAATGTATGCTTCTGCCACGTTTCAGATGAAAGAGCTTGTTTTACTTGTTCAGAGGCGTCTCCTCAATTTTGTTGAGAAGGCTCTTGTGGAAGATGTGATTCCTATTCTTATGGCTGCCTTCCGCTGCCAACTAGACCAGCTTCGGTCACACTGCATCCAAAGATTAGCAAGATCTGACCTTGAGAACACAACTTTGGATAGAGAGCTCCCACCTGAAGTTTTTAATGAAATCAAATCACTCCGACGCAAAGCTCTGGCAGAATCCACTCCTGATGCAATGGAAGTGGAACCTTCAAATGAAAAAAGTATTAGGAGAATCCTTAAAGCGTTGGACTCTGATGATATTGAGCTGATGACTCTTCTTTTGAAAGAGTCTAGTGTCACTTTAGATGATGCTTATGCCCTTCACTATGCCTGTGCCTATTGTGATCCTAAGATTTTTAAAGAAGTTCTTAATCTTGGGTTGGCTGAAATAAACCATACAAATCCCCGAGGGTATTCAGTTCTTCACATGGCCGCAAGGCGCAAAGATCCTACAATTTTAGTGGCACTGTTGACTAAAGGAGCCTGTGTATCAGATATCACACCAGATGGACAAACAGCTGTTGCGATTTGCCGGAGGATGACGAGACCCAAGGATTATAATGAGATAGAACAGCGGGGCAAGGAATCTAACAAAGACAAGCTCTGTGTTGATCTCCTGGAGAGAGAAATGAGAAGAACTTCAATGTCTGTGAATGCATCTGTTTCATCAGAGTTAACTGCTGATGATTTGCGCATGAGACTTGATTACCTGGAAAATAGAGTTGCTTTTGCTAGGCTGTTGTTTCCTGCTGAGGCTAAGGTGGCCATAGATAATGCTGAGGTTGAGTCAACATTATACGCAAACCCATCGAGAGGCTCAAATGGCAGCCTAAGAGAAGTTGTTGATCTAAATGAAACTCCTTCCATGAGAACCAGAAAACTCCAGTTAAGATTGCAATCCCTTGTGAAAACAGTTGAGAATGGCCGGCGCTTCTTTCCCCATTGCTCTGAGGTTCTCGATAAGTTTCTAGATGACGATATGCCGGATGTTTTCTTCTTAGAGAAGGGTAGCGAACAAGAACAGAGAATCAAGAAGCAACGCTTCATGGAGCTTAAAGAGGATGTGCAGAAGGCATTTCATAAGGATATGGCTGAAAACATTGGTTCAGGTTTTTCCTCCTCAGTTTCTTCCGCATCATCCTCATCCAAGAAAGGAGGTCTCAGCCAAAGAGTGAGGAAAAAGTGA 1764 0.424 MDNANEASSSLSFASSYLSNGSINPNIFACTSHEHVATLENLSLSKLSGSLEKLLIDPEYDYSDVDIVVEGKPVGVHRCILASRSQFFHELFKKENDGSVKEGKPKYLMSDLVPYGFVGHEAFCVFLHYLYTGKLKASPPQVSTCVDESCVHDACWPAINYALELMYASATFQMKELVLLVQRRLLNFVEKALVEDVIPILMAAFRCQLDQLRSHCIQRLARSDLENTTLDRELPPEVFNEIKSLRRKALAESTPDAMEVEPSNEKSIRRILKALDSDDIELMTLLLKESSVTLDDAYALHYACAYCDPKIFKEVLNLGLAEINHTNPRGYSVLHMAARRKDPTILVALLTKGACVSDITPDGQTAVAICRRMTRPKDYNEIEQRGKESNKDKLCVDLLEREMRRTSMSVNASVSSELTADDLRMRLDYLENRVAFARLLFPAEAKVAIDNAEVESTLYANPSRGSNGSLREVVDLNETPSMRTRKLQLRLQSLVKTVENGRRFFPHCSEVLDKFLDDDMPDVFFLEKGSEQEQRIKKQRFMELKEDVQKAFHKDMAENIGSGFSSSVSSASSSSKKGGLSQRVRKK 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g1965 587 Pfam NPR1/NIM1 like defence protein C terminal 371 570 IPR021094 -
Alju08g1965 587 PANTHER REGULATORY PROTEIN NPR3 14 576 IPR044292 GO:0009862|GO:2000022|GO:2000031
Alju08g1965 587 Gene3D Potassium Channel Kv1.1; Chain A 29 221 IPR011333 -
Alju08g1965 587 MobiDBLite consensus disorder prediction 563 579 - -
Alju08g1965 587 Pfam Domain of unknown function (DUF3420) 224 272 IPR024228 -
Alju08g1965 587 FunFam Regulatory protein NPR3 37 221 - -
Alju08g1965 587 ProSiteProfiles Ankyrin repeat region circular profile. 329 354 - -
Alju08g1965 587 CDD BTB_POZ_NPR_plant 52 176 - -
Alju08g1965 587 Gene3D - 263 461 IPR036770 -
Alju08g1965 587 SMART BTB_4 63 189 IPR000210 GO:0005515
Alju08g1965 587 MobiDBLite consensus disorder prediction 563 587 - -
Alju08g1965 587 SUPERFAMILY Ankyrin repeat 269 373 IPR036770 -
Alju08g1965 587 SUPERFAMILY POZ domain 45 187 IPR011333 -
Alju08g1965 587 FunFam regulatory protein NPR3-like 263 403 - -
Alju08g1965 587 Pfam BTB/POZ domain 61 158 IPR000210 GO:0005515
Alju08g1965 587 ProSiteProfiles Ankyrin repeat profile. 329 361 IPR002110 GO:0005515
Alju08g1965 587 ProSiteProfiles BTB domain profile. 63 139 IPR000210 GO:0005515
Alju08g1965 587 SMART ANK_2a 295 325 IPR002110 GO:0005515
Alju08g1965 587 SMART ANK_2a 329 358 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g1965 Alju-ChrAlju08 17743452 17747244 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Alju08g1965 NPR1_like_C 4.8e-81 No_clan