Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g1953 ATGGAGGATGAAAGTAGTAATATTAATAATATGGTGAAGAACGATGAAGATGAGGAGGAAGATGAGGAGAAAGGTATGCTTCCAGGGTTCAGATTCCATCCAACAGATGAAGAATTGGTAGGGTTTTATCTCACAAGGAAGGTTCAGAAGAAGACTCTTCGTATTGAACTCATCAAACATGTTGATATCTACAAATACGATCCCTGGGATCTCCCAAAGGCGAGCGGGAACGGAGGGGAGAAGGAATGGTATTTCTTCTGCAAGAGAGGGAGAAAGTATAGGAACAGCATCAGGCCAAACAGGGTGACTGGGTCAGGATTCTGGAAGGCAACGGGAATTGATAAGTCCATTTACAATAATGCCCTCACCCACTGCATTGGCCTCAAGAAGTCCCTCGTCTATTACAAGGGCAGTGCTGGCAAAGGCACCAAGACTGATTGGATGATGCATGAGTTTCGCCTTCCTCCTAATAACCCTACCCCCAATCATCTTCAAGAAGCTGAAGTGTGGACACTTTGCAGAATATTCAAAAGAATCCCATCCTACAGAAAATACACACCAACTTCCAAAGATACAAGAAAAGCATCAGCAACAGATTCAACCAGCTCTAAAACATTAGAATTCGACAAATACTACTACTACAACAATAACGACAACAAGCCTTATAATAGCTCGACTTGTTTTAGGTCATCATCTTCCTCATCAGACTCTATTATCACTCATCATCTTAATGATGAAAGAAGTCACTTTTTTCTGGGTCAGCTTTCAGCTAACCATCAAGCTCCTTCATCAATGGTGACTAATAATAGCTATTATAACCACAGCTTCTTGAATCATCATCATCATCAGAATGTGGAAGATGTTCTTGCCAATGGTAATTGGGATGAACTCAGATCTGTTGTTCAGTTTGCTGCTGATCATCATCATTCCACTGTGCTATGA 942 0.414 MEDESSNINNMVKNDEDEEEDEEKGMLPGFRFHPTDEELVGFYLTRKVQKKTLRIELIKHVDIYKYDPWDLPKASGNGGEKEWYFFCKRGRKYRNSIRPNRVTGSGFWKATGIDKSIYNNALTHCIGLKKSLVYYKGSAGKGTKTDWMMHEFRLPPNNPTPNHLQEAEVWTLCRIFKRIPSYRKYTPTSKDTRKASATDSTSSKTLEFDKYYYYNNNDNKPYNSSTCFRSSSSSSDSIITHHLNDERSHFFLGQLSANHQAPSSMVTNNSYYNHSFLNHHHHQNVEDVLANGNWDELRSVVQFAADHHHSTVL 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g1953 313 ProSiteProfiles NAC domain profile. 26 178 IPR003441 GO:0003677|GO:0006355
Alju08g1953 313 Gene3D NAC domain 35 184 IPR036093 GO:0003677|GO:0006355
Alju08g1953 313 MobiDBLite consensus disorder prediction 1 28 - -
Alju08g1953 313 SUPERFAMILY NAC domain 24 177 IPR036093 GO:0003677|GO:0006355
Alju08g1953 313 Pfam No apical meristem (NAM) protein 28 154 IPR003441 GO:0003677|GO:0006355
Alju08g1953 313 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 24 263 - -
Alju08g1953 313 FunFam NAC domain-containing protein 35 35 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g1953 Alju-ChrAlju08 17568165 17574209 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g1953 11 178 NAC Transcription Factor Family AT5G39820 57.895 2.81e-72 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Alju08g1953 NAM 3.6e-36 No_clan