Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g1940 ATGGCGAATGAGAAGGATCATTATTACGATCAGTATGATCTGAATAATTTCTACAATTACAACCACCACCAGAATCTTGTTCAAGGGTTTGATCATCATCATCATCCTTCTGCTAATTCACACGGTACTTCTGGTGCGAGCTTCACAGATTGCTTAAATGGAGGGTTCATGGACTATAATGTTCTCTCGAGAGCCTTTGACTTGTCTTGTTCATCAGCTTCTGAAGTGATCTCTTCCTCCATTAACGATCGTGATCAGCTCAATAATCCAAAGAAGCCATCAGAAACTAGTCCTACGACCACCGTAGGAGATTCTCAAGTAGTGAGGCTCAATTCCTCTGTGTCGAATTCGTCATCTAATAATGAAGTAGAAGAAGCCGTTGTCACAGAAGAAGACTCAGCCAAAAGCTTCAACAAAGAAAAGGACCAAGATGCAGACCAAATGTCAAAGAAAGAGAACAAGGGAAAAGGGAATAATACAAATAAGAAAGAGAAAAAGGCAAGGGAGCCGCGTTTTGCGTTCTTGACTAAAAGTGAGGTTGATCACTTAGAAGATGGCTACCGATGGAGAAAATATGGTCAGAAAGCCGTCAAGAACAGTCCTTACCCCAGGAGTTATTATAGGTGCACAAGTCAAAAGTGCAATGTGAAGAAGAGAGTGGAGAGGTCATTCCAGGATCCATCAATTGTGGTCACAACATATGAAGGCCAGCACAACCACCACTGTCCGGCCACACTTCGCGGCAGCGCCAATGCCGCCATGATGTTATCATCGGCCACGGCCGCCGCGTCCCCTTCGCTTTTCGGTTCTTCACCACTGGGAAGGACAGCCATGTTTCCCCAAGAACTTCTTGCTCAGTTTCTTCCAAGTTACCAAGGAGATGATCATCTTCATCACCAAAACCATCCCATGTTCCATCAAAACCCTAATAATAATAATAACAACAATAATTCTCACCACCACCACCACCACCACCACCACCAAGTCCCTCTTGACCATGGCTTGTTACAAGACCTGTTGCCTCCTTCTTCGTCTTCATCCTTCCCTGGTAGAAAACAAGAGCCATGA 1068 0.4457 MANEKDHYYDQYDLNNFYNYNHHQNLVQGFDHHHHPSANSHGTSGASFTDCLNGGFMDYNVLSRAFDLSCSSASEVISSSINDRDQLNNPKKPSETSPTTTVGDSQVVRLNSSVSNSSSNNEVEEAVVTEEDSAKSFNKEKDQDADQMSKKENKGKGNNTNKKEKKAREPRFAFLTKSEVDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCNVKKRVERSFQDPSIVVTTYEGQHNHHCPATLRGSANAAMMLSSATAAASPSLFGSSPLGRTAMFPQELLAQFLPSYQGDDHLHHQNHPMFHQNPNNNNNNNNSHHHHHHHHHQVPLDHGLLQDLLPPSSSSSFPGRKQEP 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g1940 355 SMART WRKY_cls 183 242 IPR003657 GO:0003700|GO:0006355|GO:0043565
Alju08g1940 355 MobiDBLite consensus disorder prediction 81 170 - -
Alju08g1940 355 MobiDBLite consensus disorder prediction 128 170 - -
Alju08g1940 355 Pfam WRKY DNA -binding domain 184 240 IPR003657 GO:0003700|GO:0006355|GO:0043565
Alju08g1940 355 Gene3D WRKY domain 169 244 IPR036576 GO:0003700|GO:0006355|GO:0043565
Alju08g1940 355 MobiDBLite consensus disorder prediction 339 355 - -
Alju08g1940 355 ProSiteProfiles WRKY domain profile. 178 243 IPR003657 GO:0003700|GO:0006355|GO:0043565
Alju08g1940 355 FunFam WRKY transcription factor 57 169 243 - -
Alju08g1940 355 SUPERFAMILY WRKY DNA-binding domain 176 243 IPR036576 GO:0003700|GO:0006355|GO:0043565
Alju08g1940 355 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 77 320 IPR044810 GO:0003700
Alju08g1940 355 MobiDBLite consensus disorder prediction 293 355 - -
Alju08g1940 355 MobiDBLite consensus disorder prediction 81 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g1940 Alju-ChrAlju08 17404386 17406415 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g1940 36 248 WRKY Transcription Factor Family AT4G18170 51.528 1.55e-59 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Alju08g1940 WRKY 1.2e-25 CL0274