Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g1909 ATGAAAACCAAGGTCGGTTTTCTTGGTGGTGGTGGCAGGATGTGGCTCAAGTGGTGGGAGAAGATCTCAGGCAATAGTTGTAAAATTCATCAACACCACTACCATCGTATTGGATCCAGGAAAGTTCGGAGAACTCTGTGGACAAAGCTTTTGCGGACATGGGTACTGGGCTGGACCATGGTATCTTTGTGGATCTTTTTCTTCATGACCTTTCAAGCCACTGAGAAGAGGAAAGAGACTCTGGCAAGTATGTGTGACGAAAGGGCTAGGATGCTTCAGGATCAGTTCAATGTTAGTATGAACCATATCCAAGCCATGTCAATTCTCATCTCGACCTTCCACCATGCCAAGTCCCCTTCTGCCATCGATCAGAGGACATTTGCTAGGTACACCGAACGAACTGCTTTTGAGAGGCCCCTTACTAGTGGTGTTGCTTATGCTGTGAGGGTGCTTCATTCTGAAAGGGACCAGTTCGAGAAGCAACATGGCTGGACCATTAAGAGGATGGATACCCTTGAGCAGAACCCCATTCATGAGGATGACTATGCCCCTGAAGCATTGGAGCCTTCCCCAGTTAAAGAAGAATATGCTCCTGTCATTTTTGCACAGGAAACAATTTCCCATGTCATTTCTGTTGATGTGCTGTCTGGAAAGGAAGATCGTGAAAATGTTCTGCGTGCTAGAGAGTTAGGGAAAGGAGTTTTAACCGTTCCTTTTAGGCTGCTCAAAACAAATCATCTGGGAATTATCCTCACTTTTGCAGTGTACAACACAAATCTTCCATCAAATGCAACCCCAAATGAAAGGATTCAAGCGACAAATGGGTATCTTGGTGGCGTCTTTGATATCGAGTCATTGGTTGAAAAATTACTTCAACAACTTGCTAGCAAGCAAACTGTGATTGTTAATGTGTATGATACTACTAATCATACCCACCCTATTCCCATGTATGGTTCAAATGTATCAGATGATGGATTCTATCATATTAGCTCCCTGAGCTTTGGAGATCCTTTCCGGAAGCATGAGATGCACTGCAGGTTCAAACAGAAACCTCCGTGGCCATGGTTGGCAATTGCTACATCAATTGGCATCCTTGTTATTGCGCTTCTTGTAGGGCATATTTTTCATGCTACTGTGAATCAAATTGCTAAAGTGGAGGAGGATTACTGTGAGATGATGGAACTTAAAAAGCGAGCTGAGGCAGCTGATGTTGCAAAATCCCAGTTTCTGGCTACTGTTTCTCATGAGATCAGAACACCAATGAATGGTGTTCTTGGAATGTTGCATACGCTTATGGACACAGATCTAGATGTAACACAGAAAGAATATGTGAGAACAGCACAGGGTTGTGGAAAAGCTCTAGTGTCGCTTATAAATGCGGTTTTGGACCAAGCAAAGATTGAATCTGGTGAGCTTGAGCTTGAGGCAGTGCCATTTGACATCCGAGCAGTTTTGGATGATGTGTTGTCACTATTCTCTGAGAAATCTCTAGGGAAAGGAGTAGAGTTGGCAGTGTGTGTCTCAGATAAGGTTCCTGAACAGCTAGTGGGTGATCCAGGAAGGTTTCGGCAAATAATTACAAATCTTATGGGCAATTCAATTAAGTTCACGGACAAAGGGCACATATTTGTCACTGTCCATCTTATTGAGGAAGTTGTCAATTCAATTGAAGTTGCAACATCAAAGAATACCTTCAGTGGCTTTCCTGTTGCTGATAGATGTAAAAGCTGGAAAGGATTCAGTTTTCTCAGTCAAGATGGACCTCTGGGTTCTTTCTCATCTCCCTCCCATGATCGCATTACTCTTATTGTTTCTGTAGAAGATACAGGCGAAGGAATTCCTGAAGAAGCCCAACCACGCATCTTCACTCCATTCATGCAGGTTGATCCATCTGTCTCCAGGAAACATGGGGGAACGGGTATTGGGCTAAGCATTAGCAAGTGCTTGGTTGGCCTCATGCATGGCGAAATTGGATTTGAGAGCACACCAAAGATCGGATCTACTTTCACATTTACAGCTGTCTTTACCAATGAATCCCCTAGTTCAACTGAGGGTAAAACCCAGCAAACTAACAACCAACCTAACCTTGCATCCTCAGAATTTCAGGGCATGACTGCACTTGTTATAGACCCTAGACCTGTCAGAGCTGAAGTGTTGAGATATCACATTAAACGGCTTGGCATTTGTGTTGAAATAGCTTCAGATCTAAATCAAGGTTTGTCTGTCATAAGCAATGGGGGTATAGTTATTAATATGATCCTAGTTGAACATGAAATCTGGGATAGAGATTCTGGTGTTTCATCTCAGTTTATCAATAACATGAGGAAAATTGATCTCGGGGTTCCTCCAAAGCTGTTCATTCTTGTTAATTCTAGTAGCTCTTCCGGAGCAAGTTCCATAACATTGGGTGTTCATAATCCAACTGTCATTGTAAAACCTCTCAGAGCAAGCATGCTTGCTGCTACACTGCTGAGAACCATGGGTGTTGGGAACAAGGGGAATCCTCGAAATGGGGAGCTTCCAAGTTTGTCTCTCCGCCACCTTTTGCGTGGGAGGAAAATCCTTATTGTAGATGACAATAGTCTGAACCGAACAGTTGCAGCTGGAGCGTTAGAAAAGTATGGAGCTGATGTGGTCTGTGTTAACAGTGGGAAAGATGCCGTCTCTATGTTGAAGCCGCCCCATCAGTTTGATGCCTGTTATATGGATATTCAAATGCCAGAAATGGATGGGTTTGAAGCTACTAGGAGGATTCGGGACATGGAATACCATGTAAACAAAGGAGAAGTGCCTGTGGAAACCTTGGAGAATACTTCAAACTGGCATATACCCATTTTGGCTATGACTGCAGATGTGATTCAGGCAACGCGTGAGGAATGCCTGAAGTGTGGAATGGATGGATATGTTTCAAAACCATTTGAAGCTGAACAGCTTTATCGGGAAGTTTCACGGTTTTTCCAATCAACTTCATGA 2973 0.4349 MKTKVGFLGGGGRMWLKWWEKISGNSCKIHQHHYHRIGSRKVRRTLWTKLLRTWVLGWTMVSLWIFFFMTFQATEKRKETLASMCDERARMLQDQFNVSMNHIQAMSILISTFHHAKSPSAIDQRTFARYTERTAFERPLTSGVAYAVRVLHSERDQFEKQHGWTIKRMDTLEQNPIHEDDYAPEALEPSPVKEEYAPVIFAQETISHVISVDVLSGKEDRENVLRARELGKGVLTVPFRLLKTNHLGIILTFAVYNTNLPSNATPNERIQATNGYLGGVFDIESLVEKLLQQLASKQTVIVNVYDTTNHTHPIPMYGSNVSDDGFYHISSLSFGDPFRKHEMHCRFKQKPPWPWLAIATSIGILVIALLVGHIFHATVNQIAKVEEDYCEMMELKKRAEAADVAKSQFLATVSHEIRTPMNGVLGMLHTLMDTDLDVTQKEYVRTAQGCGKALVSLINAVLDQAKIESGELELEAVPFDIRAVLDDVLSLFSEKSLGKGVELAVCVSDKVPEQLVGDPGRFRQIITNLMGNSIKFTDKGHIFVTVHLIEEVVNSIEVATSKNTFSGFPVADRCKSWKGFSFLSQDGPLGSFSSPSHDRITLIVSVEDTGEGIPEEAQPRIFTPFMQVDPSVSRKHGGTGIGLSISKCLVGLMHGEIGFESTPKIGSTFTFTAVFTNESPSSTEGKTQQTNNQPNLASSEFQGMTALVIDPRPVRAEVLRYHIKRLGICVEIASDLNQGLSVISNGGIVINMILVEHEIWDRDSGVSSQFINNMRKIDLGVPPKLFILVNSSSSSGASSITLGVHNPTVIVKPLRASMLAATLLRTMGVGNKGNPRNGELPSLSLRHLLRGRKILIVDDNSLNRTVAAGALEKYGADVVCVNSGKDAVSMLKPPHQFDACYMDIQMPEMDGFEATRRIRDMEYHVNKGEVPVETLENTSNWHIPILAMTADVIQATREECLKCGMDGYVSKPFEAEQLYREVSRFFQSTS 990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g1909 990 Pfam Response regulator receiver domain 854 981 IPR001789 GO:0000160
Alju08g1909 990 ProSiteProfiles Histidine kinase domain profile. 412 677 IPR005467 -
Alju08g1909 990 Gene3D - 469 679 IPR036890 -
Alju08g1909 990 FunFam Histidine kinase 4 122 351 - -
Alju08g1909 990 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 391 471 IPR036097 GO:0000155|GO:0007165
Alju08g1909 990 CDD REC_hyHK_CKI1_RcsC-like 854 982 - -
Alju08g1909 990 Pfam His Kinase A (phospho-acceptor) domain 405 470 IPR003661 GO:0000155|GO:0007165
Alju08g1909 990 SUPERFAMILY CheY-like 849 986 IPR011006 -
Alju08g1909 990 ProSiteProfiles CHASE domain profile. 118 344 IPR006189 -
Alju08g1909 990 SMART CHASE_2 118 319 IPR006189 -
Alju08g1909 990 ProSiteProfiles Response regulatory domain profile. 853 986 IPR001789 GO:0000160
Alju08g1909 990 FunFam Histidine kinase 4 377 468 - -
Alju08g1909 990 CDD PRTases_typeI 806 881 IPR000836 -
Alju08g1909 990 PRINTS Bacterial sensor protein C-terminal signature 661 674 IPR004358 GO:0016310|GO:0016772
Alju08g1909 990 PRINTS Bacterial sensor protein C-terminal signature 637 655 IPR004358 GO:0016310|GO:0016772
Alju08g1909 990 PRINTS Bacterial sensor protein C-terminal signature 620 630 IPR004358 GO:0016310|GO:0016772
Alju08g1909 990 PRINTS Bacterial sensor protein C-terminal signature 602 616 IPR004358 GO:0016310|GO:0016772
Alju08g1909 990 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 517 675 IPR003594 -
Alju08g1909 990 SMART HKATPase_4 517 677 IPR003594 -
Alju08g1909 990 CDD HisKA 405 466 IPR003661 GO:0000155|GO:0007165
Alju08g1909 990 SUPERFAMILY CheY-like 700 827 IPR011006 -
Alju08g1909 990 Gene3D - 373 468 - -
Alju08g1909 990 ProSiteProfiles Response regulatory domain profile. 705 827 IPR001789 GO:0000160
Alju08g1909 990 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 460 672 IPR036890 -
Alju08g1909 990 Gene3D CHASE domain 122 351 IPR042240 -
Alju08g1909 990 SMART REC_2 852 982 IPR001789 GO:0000160
Alju08g1909 990 Pfam CHASE domain 121 317 IPR006189 -
Alju08g1909 990 Gene3D - 69 121 - -
Alju08g1909 990 CDD HATPase_EvgS-ArcB-TorS-like 522 675 - -
Alju08g1909 990 PANTHER TWO-COMPONENT HISTIDINE KINASE 64 979 - -
Alju08g1909 990 SMART HisKA_10 405 470 IPR003661 GO:0000155|GO:0007165
Alju08g1909 990 Gene3D - 847 989 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g1909 Alju-ChrAlju08 16870124 16874878 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g1909 14 990 Miscellaneous Gene Families AT1G27320 68.902 0.0 1347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Alju08g1909 CHASE 1.2e-35 CL0165