Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g1898 ATGGAGGCTCCAAATGACCTGCAAGTAGCAGTAGCAGGAGGAGGAATTGGAGGGTCATGTTCATCTCATAATCAGAAGAAGAATGGAAGAGGGAAAATAGAGATAAAGAGAATAGAGAACACAACCAACAGGCAGGTTACTTTCTGTAAGAGACGTAATGGCTTACTCAAGAAGGCTTATGAATTGTCTGTTCTCTGCGATGCTGAAGTCGCCCTTGTTGTCTTCTCTAGCCGTGGTCGTCTCTACGAGTACGCCAACAACAGTGTTAGAGCAACCATTGAAAGGTACAAGAAAGCATGTGCTGCTTCCTCAAATACGGAGTCTGTAGCTGAAGCTAACACCCAGTTTTATCAGCAAGAATCATCCAAGTTAAGAAGGCAGATACACGACATTCAGAATTTAAACAGGCACATTCTGGGAGAAGCTCTAAGCTCCTTGAGTCTGAAGGAGCTCAAAAACCTAGAGGGCAGATTAGAAAAAGGTTTAAGCAGAGTTAGATCTAGAAAGCACGAAACATTGTTTACTGAAGTCGAGTTCATGCAAAAGCGGGAAATGGAGCTTCAAAACCATAACAATTATCTACGAGCAAAGATAGCAGAACAGGAGAGAGCAGCACAGCAGCATCAGCAATCGAGTGTGATGCAGCAGCCGGGAAGTGTGTGTGAGTCGATGCCCTCACAATCATCTTATGATCACAACTTCTTCCCTGTTAATCTCTTGCCCTCTAATAATCATCATCCCTATTCTTCTCAACATCATGATCACACTGCCCTCCAGCTTGTGTAA 786 0.4377 MEAPNDLQVAVAGGGIGGSCSSHNQKKNGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYANNSVRATIERYKKACAASSNTESVAEANTQFYQQESSKLRRQIHDIQNLNRHILGEALSSLSLKELKNLEGRLEKGLSRVRSRKHETLFTEVEFMQKREMELQNHNNYLRAKIAEQERAAQQHQQSSVMQQPGSVCESMPSQSSYDHNFFPVNLLPSNNHHPYSSQHHDHTALQLV 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g1898 261 SUPERFAMILY SRF-like 29 104 IPR036879 GO:0003677|GO:0046983
Alju08g1898 261 FunFam agamous-like MADS-box protein AGL11 40 123 - -
Alju08g1898 261 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 37 84 IPR002100 GO:0003677|GO:0046983
Alju08g1898 261 ProSiteProfiles MADS-box domain profile. 28 88 IPR002100 GO:0003677|GO:0046983
Alju08g1898 261 Gene3D - 40 109 IPR036879 GO:0003677|GO:0046983
Alju08g1898 261 PRINTS MADS domain signature 65 86 IPR002100 GO:0003677|GO:0046983
Alju08g1898 261 PRINTS MADS domain signature 30 50 IPR002100 GO:0003677|GO:0046983
Alju08g1898 261 PRINTS MADS domain signature 50 65 IPR002100 GO:0003677|GO:0046983
Alju08g1898 261 Pfam K-box region 112 198 IPR002487 GO:0003700|GO:0005634|GO:0006355
Alju08g1898 261 ProSiteProfiles K-box domain profile. 114 204 IPR002487 GO:0003700|GO:0005634|GO:0006355
Alju08g1898 261 Coils Coil 191 211 - -
Alju08g1898 261 CDD MADS_MEF2_like 29 105 IPR033896 GO:0000977|GO:0045944
Alju08g1898 261 ProSitePatterns MADS-box domain signature. 30 84 IPR002100 GO:0003677|GO:0046983
Alju08g1898 261 SMART madsneu2 28 87 IPR002100 GO:0003677|GO:0046983
Alju08g1898 261 PANTHER SERUM RESPONSE FACTOR HOMOLOG 30 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g1898 Alju-ChrAlju08 16627586 16632540 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g1898 17 261 MADS-box Gene Family AT3G58780 68.675 1.29e-112 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Alju08g1898 K-box 1.2e-25 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju08g1898 08 16627586 16632540 Alju08g1898 08 16627586 16632540 ECH