Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g1862 ATGGCTCCCGGTTTTGTATTCGAAGCTTCCAGCGACGAAGAAATCGAACGCTCTGATTCTGAAGACAAAGAACAGGAACAAAGCCAAGAAGAGGAAGCAGAAGAGCAGAGTGATTTTGATGATGGTGACGATGGTGAAGAGGAGGAAGAAGAAGAAGAAAGAGCACGAGTTTCGAATAAGAAATCTCAATCTCCGTGGGACTTCGCGAAGTACTCTGAGTCTGTCGCGGAGGAACATGCCCGACGAAGCACTACCTCAGTGGATCAGAAAATTGCCAAAGCCATTAAAGAACGTTCCGCCCCGCTCAGAAAGCCCGTTGAAGACGACCAGGAGAGCTTGGAGTCCGAATCCGACAAACAAGAGGATTATAGACTAGAAGAGGAAGAAGATGAAGGTGGCAATGAAGGCGAGAGCAAGTCTTTCTTCGCGCCATCTGACGGAGCTTCATTCTATGCTAACTCATTTATGGAGCTTAATTTGTCGCGTCCTTTGCTTCGTGCTTGTGAGGCCTTAGGATACGTTAAACCGACACCAATTCAGGCAGCGTGTATACCACTTGCATTGACTGGACGTGATATATGTGGAAGTGCCATTACCGGTTCTGGGAAGACAGCTGCATTCTCACTGCCTACTCTGGAGAGGCTTCTGTATCGTCCGAAACGTGTGCAGGCCATAAGAGTCCTCATTCTTACTCCAACCAGAGAATTGGCAGTCCAAGTTCACAGTATGATTGAGAAGCTTGCTCAGTTTACTGATATAAGGTGTTGCCTGGTCGTTGGGGGTCTGTCTACAAAGGTGCAAGAGGCGGCCTTGAGATCTATGCCGGATATTGTTGTTGCTACTCCAGGACGCATGATAGATCATTTACGCAATTCCATGTCAGTGGATTTAGATGATCTTGCTGTTCTTATCCTTGATGAGGCAGATCGTCTATTGGAGCTTGGATTTAGTGCTGAAATTCATGAACTTGTTCGTTTGTGTCCCAACAAAAGGCAGACCATGCTATTTTCAGCTACCATGACTGAGGAGGTCGATGAACTTATTAAACTTTCTCTGACAAAACCCTTGCGTCTTTCTGCTGACCCATCTACAAAACGGCCGGCAACCTTGACTGAGGAGGTGGTTAGAATAAGAAGAATGCGTGAAGTAAATCAGGAAGCAGTTCTTCTTGCATTGTGTTCCAAAACTTTTACATCTAAAGTGATCATATTCAGTGGAACAAAACAAGCTGCACATAGGTTGAAGATTATATTAGGATTAGCTGGATTAAAAGCTACTGAGCTTCATGGAAATCTTACTCAGGCCCAGCGTCTTGAATCTTTAGAGCAGTTTAGGAAGCAGCAAGTCGACTTTTTGGTTGCAACTGATGTGGCTGCTCGAGGCCTAGATATTATTGGTGTTCAAACAGTCATCAACTTTGCATGTCCGCGAGATCTTACCAGTTATGTTCATCGAGTAGGACGTACTGCAAGAGCTGGCAGAGAAGGATATGCTGTCACGTTGGTGACTGACAATGACCGGTCGCTTTTAAAAGCAATTGCAAAGAGGGTGGGTTCAAAGCTGAAGAGCCGTATTGTCGCAGAACAATCTGTAATTAAGTGGTGTCAAACAATTGAGCAAATGGAGGATGAAATTGCTGCAATTCTTGAAGAAGAGAGGGAGGAAAGAGCCCTAAGGAAAGCTGAAATGGAAGCAACAAAGGCTGAAAATATGATTGAGCATAGGGAAGAGATATATTCCCGGCCCAAAAGAACTTGGTTTATGACAGGGAAGGAGAAGAAGCTTGCTGCAAAGGCAGCCAAGATGTCTAACAAAAAGGAAAAGAGCTCTGGGAAGGAAGTAATTAGCGCGGAACAAGCTGAAGCCCTAAGAATGAAGGAAAAGAGGAAGCGAGAGCGAGAAAAAAATTTGCCCAGGAAGAAGCGCAGAAAATTGGAAGCTGCTAGAGAGATGTTGGAGGATGAAGGTCATTTTGAGAAGCCAGAAGCCAATGAGAAAAATAAGAAAGAAAAGTCTGGGATGTCACTTGTTGATGTGGCATACCGACGAGCAAAAGCAGTTAAAGCAGTGAAGAAGGCTCTAGATGCTGGCAAAATTGTGAAGAAGGGTAGGAATAAATCGAATAATTCTTCACAAAAGACTCCTTCAAGGACAGAGGAAATGCGGGAGCTTTTCCAAACTGATATGAGTGAGAAAAAACAAAAAAGAGTTGGTGGACCAGGGAAGAAATCTAAAAGTTCATTCAAAAGCAAGTCAAGGTATAAGCGCAGGTAG 2274 0.4442 MAPGFVFEASSDEEIERSDSEDKEQEQSQEEEAEEQSDFDDGDDGEEEEEEEERARVSNKKSQSPWDFAKYSESVAEEHARRSTTSVDQKIAKAIKERSAPLRKPVEDDQESLESESDKQEDYRLEEEEDEGGNEGESKSFFAPSDGASFYANSFMELNLSRPLLRACEALGYVKPTPIQAACIPLALTGRDICGSAITGSGKTAAFSLPTLERLLYRPKRVQAIRVLILTPTRELAVQVHSMIEKLAQFTDIRCCLVVGGLSTKVQEAALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPNKRQTMLFSATMTEEVDELIKLSLTKPLRLSADPSTKRPATLTEEVVRIRRMREVNQEAVLLALCSKTFTSKVIIFSGTKQAAHRLKIILGLAGLKATELHGNLTQAQRLESLEQFRKQQVDFLVATDVAARGLDIIGVQTVINFACPRDLTSYVHRVGRTARAGREGYAVTLVTDNDRSLLKAIAKRVGSKLKSRIVAEQSVIKWCQTIEQMEDEIAAILEEEREERALRKAEMEATKAENMIEHREEIYSRPKRTWFMTGKEKKLAAKAAKMSNKKEKSSGKEVISAEQAEALRMKEKRKREREKNLPRKKRRKLEAAREMLEDEGHFEKPEANEKNKKEKSGMSLVDVAYRRAKAVKAVKKALDAGKIVKKGRNKSNNSSQKTPSRTEEMRELFQTDMSEKKQKRVGGPGKKSKSSFKSKSRYKRR 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g1862 757 Gene3D - 111 359 IPR027417 -
Alju08g1862 757 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 388 532 IPR001650 -
Alju08g1862 757 CDD DEADc_DDX27 164 359 - -
Alju08g1862 757 MobiDBLite consensus disorder prediction 738 757 - -
Alju08g1862 757 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 153 181 IPR014014 GO:0003724
Alju08g1862 757 MobiDBLite consensus disorder prediction 14 52 - -
Alju08g1862 757 Pfam DEAD/DEAH box helicase 177 347 IPR011545 GO:0003676|GO:0005524
Alju08g1862 757 MobiDBLite consensus disorder prediction 1 141 - -
Alju08g1862 757 MobiDBLite consensus disorder prediction 639 676 - -
Alju08g1862 757 Coils Coil 615 637 - -
Alju08g1862 757 Pfam Helicase conserved C-terminal domain 389 493 IPR001650 -
Alju08g1862 757 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 225 513 IPR027417 -
Alju08g1862 757 MobiDBLite consensus disorder prediction 72 110 - -
Alju08g1862 757 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 304 312 IPR000629 -
Alju08g1862 757 SMART ultradead3 172 373 IPR014001 -
Alju08g1862 757 Coils Coil 538 578 - -
Alju08g1862 757 MobiDBLite consensus disorder prediction 601 676 - -
Alju08g1862 757 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 93 714 - -
Alju08g1862 757 MobiDBLite consensus disorder prediction 693 757 - -
Alju08g1862 757 CDD SF2_C_DEAD 370 502 - -
Alju08g1862 757 MobiDBLite consensus disorder prediction 601 632 - -
Alju08g1862 757 MobiDBLite consensus disorder prediction 111 134 - -
Alju08g1862 757 SMART helicmild6 412 493 IPR001650 -
Alju08g1862 757 MobiDBLite consensus disorder prediction 716 737 - -
Alju08g1862 757 Gene3D - 360 543 IPR027417 -
Alju08g1862 757 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 184 358 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g1862 Alju-ChrAlju08 16130439 16137631 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g1862 133 515 Eukaryotic Initiation Factors Gene Family AT1G72730 33.161 4.52e-51 182