Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g1836 ATGGGTCTGTGTTTGGGTAAAAGCAAAGATTCAGAGCCAGATTATAATGGATACAGATCAGTGGGGGCAACCGGAGCAGCGCAGAATTACAAAACCCATGAACCATATGCGAATCAATCGAAACCCACTTCTCATCAATTACCCGAAAAACCCTCTTCTAGGGCTCCGACAAATCCCAATAAGGCCGGCCAGAATACGATTCTGGGGAAGCAATTCGAAGATGTGAAGCAATTTTACAAGATTGGGAAAGAACTGGGACGGGGTCAATTTGGTGTCACCTATCTCTGTACTGAGATTTCAACTGGTAGACCATACGCTTGCAAGTCAATCTCGAAGAGGAAGCTTACAAGCAGAGCTGATAAGGAGGATATGAAGAGGGAGATTCATATCATGCAGCATTTGAGTGGGCAGCCTAATATTGTGGAGTTCAAAGGTGCTTATGAAGATAGTCATTCTGTTCATCTTGTGATGGAGCTGTGTGCAGGTGGTGAGCTCTTTGATCGGATTATCGCCAAGGGACATTATAGTGAAAGAGCTGCTGCATCTATATGTAGACAGATTGTTAATGTTGTTCATATCTGTCACTTCATGGGTGTGATGCATAGAGATCTCAAGCCTGAGAATTTCTTGTTGTCCAGTAAGGATGAAAAGGCACTTCTCAAAGCCACAGATTTCGGTTTGTCTGTTTTCATTGATGAAGGAAAGGTTTATCGGGATATAGTTGGGAGTGCTTATTATGTTGCTCCTGAGGTCCTACGGCGCAGATATGGGAAGGAAATCGACATTTGGAGCGCAGGAGTGATATTGTATATCTTACTCAGTGGTGTACCTCCTTTTTGGGCTGAGACTGAAAAAGGAATATTTGATGCCATTTTGGAAGGTTATATTGATTTTGAAAGTCAGCCATGGCCAAGCATATCAGACAGTGCCAAGGATCTTGTTCGTAAGATGCTGACACAAGACCCGAAAAAGCGCATAACTTCTGCTCAGGTTCTTGAGCACCCATGGATTAGAGAAGATGGAAATGCATCTGACAAGCCGATAGATAGCGCGGTCCTTTCCAGAATGAAGCAATTCAGAGTAATGAATAAGCTGAAGAAACTTGCCCTGAAGGTCATTGCGGAAAATCTCTCTGAAGAAGAGATCCAAGGGTTGAAGGCAATGTTTACGAATATGGATACCGACAACAGCGGTACGATCACCTATGAGGAATTAAAGGAGGGATTGCAGAGACTTGGCTCCAAGCTCACAGAGGCTGAAGTGCAGCAGCTTATGGAAGCTGCTGATGTAGATGGAAATGGTACCATCGACTACATAGAGTTCGTCACTGCCACAATGCATAGACATAGATTAGAAAGAGATGAGCATCTCAACAAAGCTTTCCAGTATTTTGATAAAGATCACAGCGGGTTCATAACAATGGATGAACTTGAAACGGCCATGAAAGAATATGGCATGGGCGATGAAGGCACAATCAAGGAAATCATATCAGAAGTTGACACAGACAATGATGGTAGAATCAATTATGATGAATTCTGTGCAATGATGAGGAGTGGAAACCCACAAGGCAAGTTATTCTGA 1581 0.432 MGLCLGKSKDSEPDYNGYRSVGATGAAQNYKTHEPYANQSKPTSHQLPEKPSSRAPTNPNKAGQNTILGKQFEDVKQFYKIGKELGRGQFGVTYLCTEISTGRPYACKSISKRKLTSRADKEDMKREIHIMQHLSGQPNIVEFKGAYEDSHSVHLVMELCAGGELFDRIIAKGHYSERAAASICRQIVNVVHICHFMGVMHRDLKPENFLLSSKDEKALLKATDFGLSVFIDEGKVYRDIVGSAYYVAPEVLRRRYGKEIDIWSAGVILYILLSGVPPFWAETEKGIFDAILEGYIDFESQPWPSISDSAKDLVRKMLTQDPKKRITSAQVLEHPWIREDGNASDKPIDSAVLSRMKQFRVMNKLKKLALKVIAENLSEEEIQGLKAMFTNMDTDNSGTITYEELKEGLQRLGSKLTEAEVQQLMEAADVDGNGTIDYIEFVTATMHRHRLERDEHLNKAFQYFDKDHSGFITMDELETAMKEYGMGDEGTIKEIISEVDTDNDGRINYDEFCAMMRSGNPQGKLF 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g1836 526 CDD EFh 456 517 IPR002048 GO:0005509
Alju08g1836 526 SMART efh_1 491 519 IPR002048 GO:0005509
Alju08g1836 526 SMART efh_1 384 412 IPR002048 GO:0005509
Alju08g1836 526 SMART efh_1 420 448 IPR002048 GO:0005509
Alju08g1836 526 SMART efh_1 456 484 IPR002048 GO:0005509
Alju08g1836 526 Gene3D Phosphorylase Kinase; domain 1 81 164 - -
Alju08g1836 526 ProSitePatterns EF-hand calcium-binding domain. 500 512 IPR018247 -
Alju08g1836 526 ProSiteProfiles EF-hand calcium-binding domain profile. 492 522 IPR002048 GO:0005509
Alju08g1836 526 SUPERFAMILY EF-hand 376 516 IPR011992 -
Alju08g1836 526 ProSitePatterns Protein kinases ATP-binding region signature. 85 108 IPR017441 GO:0005524
Alju08g1836 526 ProSiteProfiles EF-hand calcium-binding domain profile. 380 415 IPR002048 GO:0005509
Alju08g1836 526 ProSitePatterns Serine/Threonine protein kinases active-site signature. 199 211 IPR008271 GO:0004672|GO:0006468
Alju08g1836 526 ProSitePatterns EF-hand calcium-binding domain. 429 441 IPR018247 -
Alju08g1836 526 ProSiteProfiles EF-hand calcium-binding domain profile. 452 487 IPR002048 GO:0005509
Alju08g1836 526 Pfam Protein kinase domain 79 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju08g1836 526 ProSitePatterns EF-hand calcium-binding domain. 393 405 IPR018247 -
Alju08g1836 526 Gene3D - 346 519 - -
Alju08g1836 526 ProSiteProfiles EF-hand calcium-binding domain profile. 416 451 IPR002048 GO:0005509
Alju08g1836 526 CDD STKc_CAMK 78 336 - -
Alju08g1836 526 ProSiteProfiles Protein kinase domain profile. 79 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju08g1836 526 ProSitePatterns EF-hand calcium-binding domain. 465 477 IPR018247 -
Alju08g1836 526 FunFam Calcium-dependent protein kinase 1 81 164 - -
Alju08g1836 526 Coils Coil 402 422 - -
Alju08g1836 526 Gene3D Transferase(Phosphotransferase) domain 1 165 345 - -
Alju08g1836 526 SUPERFAMILY Protein kinase-like (PK-like) 78 344 IPR011009 -
Alju08g1836 526 FunFam calcium-dependent protein kinase 1 165 344 - -
Alju08g1836 526 MobiDBLite consensus disorder prediction 1 67 - -
Alju08g1836 526 FunFam Calcium-dependent protein kinase 1 345 520 - -
Alju08g1836 526 MobiDBLite consensus disorder prediction 22 67 - -
Alju08g1836 526 PANTHER SERINE/THREONINE-PROTEIN KINASE 72 512 - -
Alju08g1836 526 SMART serkin_6 79 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju08g1836 526 Pfam EF-hand domain pair 385 445 IPR002048 GO:0005509
Alju08g1836 526 Pfam EF-hand domain pair 455 517 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g1836 Alju-ChrAlju08 15724805 15729014 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g1836 1 522 EF-hand Containing Proteins AT3G20410 75.601 0.0 842
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Alju08g1836 Pkinase 1.1e-74 CL0016