Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g1772 ATGGAATTGGCGACGGTTACTGAGGGAATGGAACCGCCGGAGGAGACCCGATCTGAGGGCTTGCCGGTGAAAAGGCCGATTGAGAATGGTGGGGGTGAGGAATTGGCCAAGAAGGCTAAGGTTGAACCAGCTGATGCTGCTCGGTCTAGCGGGGAGTTGAAGAGAGTGGCGGAGATTGTAATGGTTTTGTCGACAATGGCGGCAATGCGAGGTGGGAAGAAGCCTACTAATGTAGAGATTGAGTTGATGAAGGAAGCGAGGATGAAGTTGGTGGAGTTGTGTCAAGGGATGGCTCCCAAGGATATTGTGGCGAGGGAAGCTGTGGGGACTGTGATTGAGGATCTTGGATTGAACGGGAAGATTAAAGATCAGAGATTAGGGTTTCAAACTCCAAAGATGTCTATAACCGAAAGGTTCTCACTCTCCAAGTTGAAGATGGAAGAGTCAAAGAAACTTCCTGAACATTCTGCTCCATCAACTTCTCAGCCATTGCAAACAAGCATGGGTGGTGGAATGGTTGAAAACCGTATGCCATCTCATGCTGTTCGAATGTATCCCTTGGACAAATCAAGCCACAATGGACTCTCTTCTTCTGGTACCATAGCTTCTCCCGTGACTCATGTTTCTGCTGCATCTTCTGTTGCTTTGCAATATCAATCAACTACTGGTGAAGTAAAACCACCTATAGTTTCTGGTGGAATGCCTAGCAGTCAATTGGGTAGAAATTCATCTTCCGTAGCATTGCCTAAAGTTGAACAACCACAGTTCAGAGTTGATGGCGGAACAAGTGGGCCTTATTTGCTGCATGCTCAAGCAAACTCTTCATCAAACCAACCCTTGGTGAATGCTCCAACATGGTCAATACAAACTCAAACTCAGTCTGCCTCATTCGCTAGAAGTACACAAGAAAACAAAGTGACCGGACATAACCCTGTCAAGGTTGAGGGAATGGGTGACCTAACTGGGCCAAGACCTGCTTCACAGATAGCAAGGGATCAGAGCTATAGACCATTAGTAACTCAAACAGTACCTGGAAATTTATCTAGCTTTCACCAACCATTACAGGGCTTGAACATTATTCAGCCTCCTTCACTTCCTAATAATCACTCTGAAATTGCAAAGATTGTCCAGAAACTATTACAGCCAAAGATTCCGGAGCATCCCACATGGACTCCTCCATCAAGGGATTATATGAACAAGGCATTTACTTGCCAGATGTGTGATCTCACAGTCAATGAAGTGGATACTGTGCTTCTTTGTGATGCTTGTGAAAAAGGGTTTCACTTGAAGTGTTTGCAGCCATCACTTTTGAGAGGAATTCCTAGAGGCGAGTGGCACTGCATGAGGTGCTTGACATTAAGCGGTGGAAAGCCTTTGCCTCCAAAATATGGTCGTGTCATGAGGTCTGCGAACACTCCGCCAAAACTGCCCTCTAACACAGGTGGAGTCCAACCATCCTCAGAGAAGAAAACTGGAGCTGCAGCTCTAAAGGTCAGCTCACTGGATTCAACAACAAATGGAGGCTCTGTTTCGACTGGTGCCGCTAGTAACAATAAGAATGCTGAGCTTCCATCTGTCTCAAAGATCCCTGATACAAAAGAAATGCAAGATAACACTCATTCGTCCAGAAGCAAACACATGGATGAGAAGCCTGACCCAAATATCTCAATAAAATCCCTTAGTGCAGCTTCTAGTCCTTCTGTTGGCTTGCCAGGTGAGAGTTCTTCTGAACAAATAATTTCTGAGCCATCTACCTCTAAAGAGAGAACCTTTGCTTCAGAACCTGAAGTACTTCCTCAATTAAATGAGTCAGTTAAACCTAACAACTTGCAATTGTCAAAAAATGCACAAGTTGAACTGACGCCACTATCAAACATTGCTGAAGTTTCATTATATAAACATGGTGACAATAGTTTGACAGAGGATAACAGAAAGGAATCTCATGGGGGAGAAAGTTTGATATATGATATCAAACGTGATGACCAATATGCTGCACTAGCAAATTCTGATAAAAGTTCTGGAACACATGCTGAAGGTAAACAATGCACTGCATTATATTCAGATGGCTTACATGCAGTAGAATGGGCTGGTGATCCTGTACAACTTGTTGATGAGAAAAGGTTTTACCAATCTTGCCGAGTTAATGGAGTTACATATAGGCTGCAGGATCATGCTCTTTTTAAATCCAGTCATGGCAAGTTAATTCCATCGAAACTGCAGTCTATGTTTGAAGATAGCAAAACTGGATTGAAGTGGGTAAATGTGATGACGTGCTACTTTCCTGGCAATTTACCAGGGAATATCCCTCATCCATGTATATCTGAAGTCAATGAGGTTTATGAATCTAATAGTGATAGAACTGAAATGGCTGGCTCCATTCAAGGTTCCTGTGAAGTCCTCCCGTCTGATAAATTTCAACAAGAAAACAGTAGACGAAGAGGGTTAGAACCTGAGGAAAGCGCTAGACTTCGGCCAATTTTCCTTTGCAGATGGTTCTATGATGGAGTCAAAAAATTATTTCAGCCTGTTACCAGTTGA 2538 0.4362 MELATVTEGMEPPEETRSEGLPVKRPIENGGGEELAKKAKVEPADAARSSGELKRVAEIVMVLSTMAAMRGGKKPTNVEIELMKEARMKLVELCQGMAPKDIVAREAVGTVIEDLGLNGKIKDQRLGFQTPKMSITERFSLSKLKMEESKKLPEHSAPSTSQPLQTSMGGGMVENRMPSHAVRMYPLDKSSHNGLSSSGTIASPVTHVSAASSVALQYQSTTGEVKPPIVSGGMPSSQLGRNSSSVALPKVEQPQFRVDGGTSGPYLLHAQANSSSNQPLVNAPTWSIQTQTQSASFARSTQENKVTGHNPVKVEGMGDLTGPRPASQIARDQSYRPLVTQTVPGNLSSFHQPLQGLNIIQPPSLPNNHSEIAKIVQKLLQPKIPEHPTWTPPSRDYMNKAFTCQMCDLTVNEVDTVLLCDACEKGFHLKCLQPSLLRGIPRGEWHCMRCLTLSGGKPLPPKYGRVMRSANTPPKLPSNTGGVQPSSEKKTGAAALKVSSLDSTTNGGSVSTGAASNNKNAELPSVSKIPDTKEMQDNTHSSRSKHMDEKPDPNISIKSLSAASSPSVGLPGESSSEQIISEPSTSKERTFASEPEVLPQLNESVKPNNLQLSKNAQVELTPLSNIAEVSLYKHGDNSLTEDNRKESHGGESLIYDIKRDDQYAALANSDKSSGTHAEGKQCTALYSDGLHAVEWAGDPVQLVDEKRFYQSCRVNGVTYRLQDHALFKSSHGKLIPSKLQSMFEDSKTGLKWVNVMTCYFPGNLPGNIPHPCISEVNEVYESNSDRTEMAGSIQGSCEVLPSDKFQQENSRRRGLEPEESARLRPIFLCRWFYDGVKKLFQPVTS 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g1772 845 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 15 844 - -
Alju08g1772 845 MobiDBLite consensus disorder prediction 557 591 - -
Alju08g1772 845 MobiDBLite consensus disorder prediction 533 553 - -
Alju08g1772 845 Gene3D - 696 845 IPR043151 -
Alju08g1772 845 ProSitePatterns Zinc finger PHD-type signature. 404 450 IPR019786 -
Alju08g1772 845 ProSiteProfiles Zinc finger PHD-type profile. 401 453 IPR019787 -
Alju08g1772 845 ProSiteProfiles BAH domain profile. 717 844 IPR001025 GO:0003682
Alju08g1772 845 SMART PHD_3 403 451 IPR001965 -
Alju08g1772 845 MobiDBLite consensus disorder prediction 497 525 - -
Alju08g1772 845 Pfam PHD-finger 404 451 IPR019787 -
Alju08g1772 845 SUPERFAMILY FYVE/PHD zinc finger 394 458 IPR011011 -
Alju08g1772 845 MobiDBLite consensus disorder prediction 147 170 - -
Alju08g1772 845 MobiDBLite consensus disorder prediction 1 43 - -
Alju08g1772 845 MobiDBLite consensus disorder prediction 155 169 - -
Alju08g1772 845 MobiDBLite consensus disorder prediction 461 602 - -
Alju08g1772 845 MobiDBLite consensus disorder prediction 297 335 - -
Alju08g1772 845 MobiDBLite consensus disorder prediction 472 487 - -
Alju08g1772 845 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 403 452 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g1772 Alju-ChrAlju08 15065780 15070093 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g1772 414 490 C2H2 Transcription Factor Family AT3G01460 30.488 8.87e-06 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Alju08g1772 PHD 1e-08 CL0390