Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g1747 ATGAGAGATCGAACAACAGGTCGTGCTCGTGGTTTTGGTTTCATCGTGTTTGCTGATCCTGCTGTTGCAGAAAGAGTCATTATGGATAAGCACATAATTGATGGCCGCACAGTTGAAGCAAAGAAAGCTGTTCCCAGGGATGATCAGCAGATGATAAATAGAACTTCTGGTAGTGTCCATGGCTCTCCTAGTCCTGGGCGCACAAAAAAGATTTTTGTTGGAGGTCTGCCTTCAAGCATTACTGAAAGTGAATTCAAGAAGTATTTTGATCAGTTTGGTACAATCAATGATGTTGTAGTAATGTATGATCACAATACTCAGAGGCCAAGAGGCTTTGGCTTCATCACTTATGACTCAGAAGATGCCGTTGACAGAGTTCTTTATAAAACATTCCATGAGCTCAATGGAAAAATGGTTGAGGTCAAGAGGGCGGTTCCAAAAGAGCTTTCCCCCGGATCCAGCCGAAGCCCGTTGTTAGGAACAAGTTTTGGTTTTAATAGGGCCAGTAGCTACCTAAACAGTTACGCACAGGGTTATAATATGAGTCCAGTTGGAGGCTATGGGATGAGGATGGATGGTAGGTTCAGTCCTCTTACAAGTGGCAGAAGCGGAATTTCCCCCTTCGGCACCAGTGGTTATGGAATGGGACTGAATCTTGATGCAGGACTGAGTGCAGGATATGGTGGAACTTCGAATTATGGAAGCAATCTCGGATATGGTCGGATGATTAGTCCTTTTTACAGTGGCAACTCAAGCAGATATACCACTCCTATAGGCTACAATACCGGTAATGGGAGAAGCAATTCTCTGATGAACTCATCTCCTAGAAATGTCTGGGGAAGTGGTGGCCTAAGTAATGCCAATAACCAAGTCAGTGCTGGTGCTGGCATGGGAACTGGAAGTGGTGCTTTTGGCGTTTCAATTAAAAATACTGGTGCAAATTGGGGTCAATCCTTTCCGGTTCAGGGTGGAGCTGCTGCTTCGGGCTATACCACTGGGATTAATGTTTATGAAGGTGGAGACAACAGTTTTGGGTTAGGAGGTACAGTGTATGGAAGAAATGGCAGTGTAGGTGTAAATTCATCTTCTGCATTTTCTGCTTCAGCTGGTGGTTATGAAGGATCCTATGGGGATTTATACCATAATGGTTCAGTTTACGATGACTCAACTTGGAGGTCAGCTGTTTCTGACCTAGATGGTTCTGGTTCATTTGATTATGGACTTGGTGGTATAGCCTCTGAGGATCCAGTAAAGACTTCAGAGGGTTATATTGGAAACTACAATGTTTCAAGCAGACAACCTAACAGAGGAATTGCTACTTAG 1323 0.4407 MRDRTTGRARGFGFIVFADPAVAERVIMDKHIIDGRTVEAKKAVPRDDQQMINRTSGSVHGSPSPGRTKKIFVGGLPSSITESEFKKYFDQFGTINDVVVMYDHNTQRPRGFGFITYDSEDAVDRVLYKTFHELNGKMVEVKRAVPKELSPGSSRSPLLGTSFGFNRASSYLNSYAQGYNMSPVGGYGMRMDGRFSPLTSGRSGISPFGTSGYGMGLNLDAGLSAGYGGTSNYGSNLGYGRMISPFYSGNSSRYTTPIGYNTGNGRSNSLMNSSPRNVWGSGGLSNANNQVSAGAGMGTGSGAFGVSIKNTGANWGQSFPVQGGAAASGYTTGINVYEGGDNSFGLGGTVYGRNGSVGVNSSSAFSASAGGYEGSYGDLYHNGSVYDDSTWRSAVSDLDGSGSFDYGLGGIASEDPVKTSEGYIGNYNVSSRQPNRGIAT 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g1747 440 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 436 - -
Alju08g1747 440 Gene3D - 1 51 IPR012677 -
Alju08g1747 440 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 71 129 IPR000504 GO:0003723
Alju08g1747 440 FunFam Heterogeneous nuclear ribonucleoprotein 1 66 153 - -
Alju08g1747 440 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 45 IPR000504 GO:0003723
Alju08g1747 440 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 69 146 IPR000504 GO:0003723
Alju08g1747 440 Gene3D - 66 154 IPR012677 -
Alju08g1747 440 SUPERFAMILY RNA-binding domain, RBD 1 66 IPR035979 GO:0003676
Alju08g1747 440 CDD RRM2_Hrp1p 70 147 - -
Alju08g1747 440 SMART rrm1_1 70 142 IPR000504 GO:0003723
Alju08g1747 440 SUPERFAMILY RNA-binding domain, RBD 68 234 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g1747 Alju-ChrAlju08 14876571 14878935 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g1747 9 170 Eukaryotic Initiation Factors Gene Family AT2G36660 29.885 2.96e-09 57.4