Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g1745 ATGATAATCCTCGTCGCTCAAGCAGGAGAACAGATGGAATCAGATCTTGGCAAGCTTTTCATTGGAGGAATTTCTTGGGACACTGATGAAGAACGGCTTAAAGAATATTTTGGGAACTATGGAGAGGTGATAGAGACCGTGATCATGAGAGATCGCACGACAGGTCGTGCTCGTGGTTTTGGTTTTGTAGTGTTTGCTGATCCTGCTGTTGCAGAAAGAGTCATTATGGATAAGCACATAATTGATGGCCGCACAGTTGAAGCAAAGAAAGCTGTTCCCAGGGATGATCAGCAGATGATAAATAGAACTTCTGGTAGTGTCCATGGCTCTCCTGGTCCTGGGCGTACAAAAAAGATTTTTGTCGGAGGTCTGCCTTCAAGCATAACTGAAAGTGAATTTAAGAAGTACTTTGATCAGTTTGGTACAATCAATGATGTTGTAGTAATGTATGATCACAATACCCAGAGGCCAAGAGGCTTTGGCTTCATCACTTATGATTCAGAAGATGCTGTGGACAGAGTTCTTTATAAAACATTCCATGAGCTCAATGGAAAAATGGTTGAGGTCAAGAGGGCGGTTCCAAAAGAGCTTTCCCCCGGATCCAGCCGAAGCCCGTTGTTAGGAACAAATTTTGGTTTTAACAGGGCCAGTAGCTACCTAAACAGTTATGCACAGGGTTATAACATGAGTCCAGTTGGAGGCTATGGGATGAGGATGGATGGTAGGTTCAGTCCTCTCACAAGTGGCAGAAGCGGAATTTCCCCCTTTGGCACCAGTGGTTATGGAATGGGACTGAATCTGGATGCAGGACTGGGTGCAGGATATGGTGGGACTTCGAATTATGGAAGCAATCTCGGATATAGCCGGATGATTAGTCCTTTTTACAGTGGCAACTCAAGTAGATATACCACTCCTATAGGCTACAATGCTAATAATGGGAGAAGTGATTCTCTGATGAACTCATCTTCTCGAAATGTATGGGGAAATGGTGGCCTTAGTAATGCCAATAACCAAGTCAGTGCTGGTGCTGGCTTGGGAACTGGTAGTGGCGCTTTTGGCGTTTCAATTAAAAATACAGGTGCAAATTGGGGTCAATCCTTTCCAGTGCAGGGTGGAGCAGCTGCTTCAGGCTATACCACTGGGATTAATGTTTATGAAGGTGGAGACGATAGTTTTGGGTTAGGTGGTGCAGGTTATGGAAGAAATGGTAGTGTAGGTGTAAATTCATCTTCTGCATTTTCTGCTTCAGCTGGTGGTTATGAAGGATCCTATGGGGCTTTATATCAAAATAGTTCAGTTTACAGTGACTCAGCTTGGCGGTCGTCTGCTGCTTCTGATCCAGATAGTTCTGGTTCCTTTGGTTATGGACTTGGTGGTATAGCCTCAGAGGACCCAGTAAACACTTCAGAGGGTTATATTGGGAGCTACAATGTTTCAAGCAGGCAACCTAATAGAGGAATTGCAACCTAG 1470 0.4449 MIILVAQAGEQMESDLGKLFIGGISWDTDEERLKEYFGNYGEVIETVIMRDRTTGRARGFGFVVFADPAVAERVIMDKHIIDGRTVEAKKAVPRDDQQMINRTSGSVHGSPGPGRTKKIFVGGLPSSITESEFKKYFDQFGTINDVVVMYDHNTQRPRGFGFITYDSEDAVDRVLYKTFHELNGKMVEVKRAVPKELSPGSSRSPLLGTNFGFNRASSYLNSYAQGYNMSPVGGYGMRMDGRFSPLTSGRSGISPFGTSGYGMGLNLDAGLGAGYGGTSNYGSNLGYSRMISPFYSGNSSRYTTPIGYNANNGRSDSLMNSSSRNVWGNGGLSNANNQVSAGAGLGTGSGAFGVSIKNTGANWGQSFPVQGGAAASGYTTGINVYEGGDDSFGLGGAGYGRNGSVGVNSSSAFSASAGGYEGSYGALYQNSSVYSDSAWRSSAASDPDSSGSFGYGLGGIASEDPVNTSEGYIGSYNVSSRQPNRGIAT 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g1745 489 Gene3D - 17 99 IPR012677 -
Alju08g1745 489 FunFam Heterogeneous nuclear ribonucleoprotein 1 114 201 - -
Alju08g1745 489 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 194 IPR000504 GO:0003723
Alju08g1745 489 SMART rrm1_1 18 89 IPR000504 GO:0003723
Alju08g1745 489 SMART rrm1_1 118 190 IPR000504 GO:0003723
Alju08g1745 489 SUPERFAMILY RNA-binding domain, RBD 11 115 IPR035979 GO:0003676
Alju08g1745 489 SUPERFAMILY RNA-binding domain, RBD 116 282 IPR035979 GO:0003676
Alju08g1745 489 FunFam Heterogeneous nuclear ribonucleoprotein 1 16 98 - -
Alju08g1745 489 Gene3D - 114 202 IPR012677 -
Alju08g1745 489 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 19 86 IPR000504 GO:0003723
Alju08g1745 489 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 177 IPR000504 GO:0003723
Alju08g1745 489 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 17 93 IPR000504 GO:0003723
Alju08g1745 489 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 12 485 - -
Alju08g1745 489 CDD RRM1_hnRNPA_hnRNPD_like 19 89 - -
Alju08g1745 489 CDD RRM2_Hrp1p 118 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g1745 Alju-ChrAlju08 14862174 14865501 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g1745 13 218 Eukaryotic Initiation Factors Gene Family AT2G36660 28.899 6.32e-15 75.5