LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju08g1740	ATGGACGCCGCTATCAACTCCGCGGAGGCTCGCTCTGGTTCGGAGCTCCGGCTCTGCCAGGTCTCTTCCTCCGATCCGACTCAATTCGTCGTTTCCCGAGGTGCAAGGTACAAGCTCATGTCCCCTGCTAGTCTTCCGATCTCCAGGTCGCCCTGTATCACGATTCCGCCTGGCCTCAGTCCCTCCTCGTTTCTTGAGTCCCCGGTGCTTCTCTCCAGCGTCAAGGTGGAGCCTTCACCAACTACTGGGTCCCTTACTAAACCTATGTCTGTCCAAGAATCTGTTTCTTCTTCAACATATCCTGTAACCACTGTACGCTTCAAAACCAATACTGTTGATGACAAAATATCTGGCTTCTTTGAGTTTAACTCAAACAATAGATCGAATATGGCTCCCACAGATTTCAACAGCCATGTAAACAAACCATCTATGCAGATACAAGGTTCAAGCCAAGCTCAGTCTTCTGCTTCATCACCATTAGTGAAAAGTGAGATGGAAATGCTGTCAAATGAATTAAGTTTATCATCACCTGTTCAAATGGTTTGTTCAGGGGCTAGTGCTCCTGTTCAAGCTGATTTCAATGTAGTTAATGTGCTTCAAGCTTCACAAGCTGAAGTTAGAGGCAGTGGTATCTCAGTTGCTACCGAGAGAACATCTGATGATGGATATAACTGGCGGAAATATGGACAGAAGCATGTTAAAGGGAGTGAATTTCCACGCTGCTATTACAAATGTACACATCCTAACTGTGAAGTGAAAAAACTGTTTGAACGCTCTCATGATGGGCAAATAACGGAGATAATTTACAAGGGATCACATGATCATCCTAAACCTCAACCAAGTCGCCGATACTCTCCTAGTACTACTATGTCTATGCATGAGGAGAGATTTGAGAAGCCTTCACCTTTGTCTGGCCAAGATGCAAATGATGATGGTCGGGAGGGTGCTGGATTAGCTTCCAACAGGATCAATGATGAGGTAGATGATGACGACCCTTTCTCTAAGCGAAGGAAGGTGGAGAATGGAAATGCTGACATCGCTCCTATAGTTAAGCCTATTCGAGAACCAAGGGTTGTTGTACAAACTCTAAGTGAAGTTGACATATTGGATGATGGGTATCGCTGGCGAAAGTATGGGCAGAAGGTGGTGAGAGGCAATCCCAACCCTAGGAGCTACTACAAATGCACAAATACCGGTTGCCCTGTTAGGAAACACGTGGAGAGAGCTTCTCATGATCCCAAAGCAGTAATAACCACGTATGAGGGTAAGCACAATCATGATGTCCCTACTGCAAGGAGTAGTAGCCATGATACAGCAGGACCAGCAGCTCCAGTTGGACAGACACAAATAAGATTGGAAGAAAGCGATACCATTAGCCTCGACCTTGGGATGGGTATCAGCTCAGCTGCTGAACATAAATTGAAGGGGCAAGGGCAAATGCTACTCTCTGAATTTGGGAATGGTCAAACTCATGCCAACAGTTCCAATTTCAAGTTTGTTCATAATGCCCCAGCTCCAGCATACTTTGGTGTTTTAAATAATGGCTCAAATCCATTTGGTTCTTCTAGACAACCCCCATCTTTGAACCATACCACTTATCGTTACCCGCAGCCACAGGGCATGGGAAGAATACTAACAGGTCCATGA	1647	0.4572	MDAAINSAEARSGSELRLCQVSSSDPTQFVVSRGARYKLMSPASLPISRSPCITIPPGLSPSSFLESPVLLSSVKVEPSPTTGSLTKPMSVQESVSSSTYPVTTVRFKTNTVDDKISGFFEFNSNNRSNMAPTDFNSHVNKPSMQIQGSSQAQSSASSPLVKSEMEMLSNELSLSSPVQMVCSGASAPVQADFNVVNVLQASQAEVRGSGISVATERTSDDGYNWRKYGQKHVKGSEFPRCYYKCTHPNCEVKKLFERSHDGQITEIIYKGSHDHPKPQPSRRYSPSTTMSMHEERFEKPSPLSGQDANDDGREGAGLASNRINDEVDDDDPFSKRRKVENGNADIAPIVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNTGCPVRKHVERASHDPKAVITTYEGKHNHDVPTARSSSHDTAGPAAPVGQTQIRLEESDTISLDLGMGISSAAEHKLKGQGQMLLSEFGNGQTHANSSNFKFVHNAPAPAYFGVLNNGSNPFGSSRQPPSLNHTTYRYPQPQGMGRILTGP	548

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju08g1740	548	MobiDBLite	consensus disorder prediction	131	160	-	-
	Alju08g1740	548	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	66	453	IPR044810	GO:0003700
	Alju08g1740	548	MobiDBLite	consensus disorder prediction	268	340	-	-
	Alju08g1740	548	SUPERFAMILY	WRKY DNA-binding domain	215	278	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Alju08g1740	548	Pfam	WRKY DNA -binding domain	220	276	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Alju08g1740	548	Pfam	WRKY DNA -binding domain	370	426	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Alju08g1740	548	FunFam	WRKY transcription factor 33	356	422	-	-
	Alju08g1740	548	Gene3D	WRKY domain	210	279	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Alju08g1740	548	Gene3D	WRKY domain	354	430	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Alju08g1740	548	FunFam	WRKY transcription factor	207	279	-	-
	Alju08g1740	548	SMART	WRKY_cls	369	428	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Alju08g1740	548	SMART	WRKY_cls	219	277	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Alju08g1740	548	SUPERFAMILY	WRKY DNA-binding domain	361	429	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Alju08g1740	548	ProSiteProfiles	WRKY domain profile.	214	278	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Alju08g1740	548	MobiDBLite	consensus disorder prediction	517	536	-	-
	Alju08g1740	548	MobiDBLite	consensus disorder prediction	425	448	-	-
	Alju08g1740	548	MobiDBLite	consensus disorder prediction	323	340	-	-
	Alju08g1740	548	MobiDBLite	consensus disorder prediction	517	548	-	-
	Alju08g1740	548	ProSiteProfiles	WRKY domain profile.	364	429	IPR003657	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju08g1740	Alju-ChrAlju08	14801098	14805316	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju08g1740	40	548	WRKY Transcription Factor Family	AT4G26640	54.880	2.93e-177	508

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Alju08g1740		WRKY	1.6e-25	CL0274