Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g1710 ATGGCGGACTCGGATAACGATTCCGGAGGGGCGCAGAACACGGGAGGCAATGCAAACAGTAGCGAATTGTCGCCGCGAGAGCAGGACCGGTTCCTTCCGATAGCAAACGTGAGCAGGATCATGAAGAAGGCGCTTCCGGCGAATGCGAAGATCTCGAAGGACGCGAAGGAGACAGTGCAAGAGTGCGTATCGGAGTTCATCAGCTTCATCACCGGAGAGGCCTCCGATAAGTGCCAGAGGGAGAAGCGGAAGACCATCAACGGCGACGACTTACTCTGGGCGATGACCACGCTGGGATTCGAGGACTACGTGGAGCCACTCAAGATTTACTTGCAGAGGTTCAGAGAAATGGAGGGAGAGAAGAGCGTGGTGGCGGCACGTGACAGGGAAGGTGGTGGCGCGTCGAACAGTGCGTTTGACGGCGGTGGCGGAGTGTACGGGGGTAGCGGAGGTGGAATGGGAATGATGATGCATCAAGGACACGTGTACGGCTCTGGTGGATTTCATCAAATGGGCGTAAGTGGTGGTCCTATTATGGGAAAGAGCGGGCCATCTTATCCGGGCCCTGGATCTAATACGGGTAGACCCAGATAG 594 0.5657 MADSDNDSGGAQNTGGNANSSELSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKIYLQRFREMEGEKSVVAARDREGGGASNSAFDGGGGVYGGSGGGMGMMMHQGHVYGSGGFHQMGVSGGPIMGKSGPSYPGPGSNTGRPR 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g1710 197 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 5 128 IPR027113 GO:0001228|GO:0006355|GO:0016602
Alju08g1710 197 MobiDBLite consensus disorder prediction 1 26 - -
Alju08g1710 197 PRINTS CCAAT-binding transcription factor subunit A signature 78 96 - -
Alju08g1710 197 PRINTS CCAAT-binding transcription factor subunit A signature 97 115 - -
Alju08g1710 197 PRINTS CCAAT-binding transcription factor subunit A signature 59 77 - -
Alju08g1710 197 Gene3D Histone, subunit A 19 138 IPR009072 GO:0046982
Alju08g1710 197 FunFam Nuclear transcription factor Y subunit B-3 20 140 - -
Alju08g1710 197 SUPERFAMILY Histone-fold 28 128 IPR009072 GO:0046982
Alju08g1710 197 MobiDBLite consensus disorder prediction 1 28 - -
Alju08g1710 197 ProSitePatterns NF-YB/HAP3 subunit signature. 62 78 IPR003956 GO:0005634|GO:0006355|GO:0043565
Alju08g1710 197 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 31 95 IPR003958 -
Alju08g1710 197 MobiDBLite consensus disorder prediction 174 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g1710 Alju-ChrAlju08 14327030 14327623 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g1710 1 127 CCAAT-HAP3 Transcription Factor Family AT4G14540 85.827 1.23e-75 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Alju08g1710 CBFD_NFYB_HMF 1.8e-27 CL0012