Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g1697 ATGGAAGGTTCAAGAGGTCCCTTCTTTCCCTCTGGCCACCGCCGCCACGACCAACAACCTGCAAGCTCTGGTTCGAATCTCATGGGCACGGCCAACCCAGCCGGACACGGCGGAGTTCCGGTGACCCCAAACCAGATTCAGCCGCAGCAGCAGCGTGCGCAGCGCGTGATGATGAGAGAGCAGGACCAGTACATGCCGGTGGCGAACGTTATCAGGATCATGCGACGGATCCTTCCGCTGCACGCTAAGATCTCCGACGAAGCCAAGGAGACGATCCAAGAGTGTGTCTCTGAGTACATAAGCTTCATCACCAGCGAGGCTAACCAGCGCTGCCAGCAAGAGCAGCGCAAGACGGTGACGGCGGATGACTTGCTGTGGGCCATGGAGAAGCTCGGTTTTGACGACTACGTGGGCCCTCTCTCTCTCTACCTCCAACGTTACCGTAACGGTGACGGTGGTTCCGGTGGTGGCCACTATGTCCCACAGTCACAGCAAGTTCCGGCTCCGGAACCCGCACCTGTAATGCAGCCGCCACCTCCGCCGCCATCGTACTATTATGGGTCGGGTTACAATTATCCGGTGGGGCCGAATCAGATGGGGTCGGGTACTGTTGGCGGTGGTCCGGCGTATTATGATCCGTTTGGTCACCCGAGAAATGACCGTTTCTGA 669 0.5859 MEGSRGPFFPSGHRRHDQQPASSGSNLMGTANPAGHGGVPVTPNQIQPQQQRAQRVMMREQDQYMPVANVIRIMRRILPLHAKISDEAKETIQECVSEYISFITSEANQRCQQEQRKTVTADDLLWAMEKLGFDDYVGPLSLYLQRYRNGDGGSGGGHYVPQSQQVPAPEPAPVMQPPPPPPSYYYGSGYNYPVGPNQMGSGTVGGGPAYYDPFGHPRNDRF 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g1697 222 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 48 152 IPR027113 GO:0001228|GO:0006355|GO:0016602
Alju08g1697 222 MobiDBLite consensus disorder prediction 1 53 - -
Alju08g1697 222 SUPERFAMILY Histone-fold 61 169 IPR009072 GO:0046982
Alju08g1697 222 MobiDBLite consensus disorder prediction 153 180 - -
Alju08g1697 222 PRINTS CCAAT-binding transcription factor subunit A signature 130 148 - -
Alju08g1697 222 PRINTS CCAAT-binding transcription factor subunit A signature 92 110 - -
Alju08g1697 222 PRINTS CCAAT-binding transcription factor subunit A signature 111 129 - -
Alju08g1697 222 MobiDBLite consensus disorder prediction 166 180 - -
Alju08g1697 222 Gene3D Histone, subunit A 51 156 IPR009072 GO:0046982
Alju08g1697 222 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 65 128 IPR003958 -
Alju08g1697 222 MobiDBLite consensus disorder prediction 16 30 - -
Alju08g1697 222 FunFam Nuclear transcription factor Y subunit B-6 53 167 - -
Alju08g1697 222 MobiDBLite consensus disorder prediction 201 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g1697 Alju-ChrAlju08 13963592 13965367 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g1697 54 155 CCAAT-HAP3 Transcription Factor Family AT5G47670 73.529 7.63e-54 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Alju08g1697 CBFD_NFYB_HMF 7.8e-24 CL0012