Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g1645 ATGAGGGTCACTGTAATGACAGCTGATGAACAAATCCTTACGTTGGACGTTGATCCCCATGAATCTGTGGAAAACGTAAAAGCATTGCTTGAGGTAGAGACACAAGTGCCTCTTCAGCAGCAGCAACTTCTCTTTAACGGAAGGGAGATGAGTAATTCTGAGAAATTGAGTGCTCTCGGTGTTAAAGATGAAGATTTGGTGATGATGGTCTCTGCTGCTCCTTCTGGTGCACCTACCAATGATTTAGGCTTCAATCCTGATGGATCTGCTGTTAATCCTGCTGCTTTCCAGCAGCACATTAGACAGGATTCTAACCTGATCGGTCAGCTCTTTCAGACTGATCCAGAGTTGGCACAAGCTATCTTAGGAAACGATCTTAACAGAATACAGGAGATTTTACGAGTGCGTCATCAACAGAGATCTGAATTACAGCGACAAAAAGAGGAGGAACTTGCTCTTCTTTATGCAGATCCTTTTGATGTTGAAGCACAAAAGAAGATTGAAGCTGCCATTCGTCAGAAAGGAATTGATGAAAACTGGGCAGCTGCACTAGAACATAATCCCGAAGGTTTTGCAAGAGTGGTCATGTTGTATGTTGACATGGAGGTTAATGGTGTCCCACTGAAGGCATTTGTTGACAGTGGAGCCCAGTCTACAATTATATCGAAAAACTGTGCTGAGCGCTGTGGATTGTTAAGACTTCTGGATCAGCGTTACAAGGGAATTGCTCATGGAGTTGGCCAATCAGAGATATTAGGACGAATACACGTAGCTCCAATCAAGATTGGGAATATATTCTACCCTTGCTCGTTCTTAGTGCTCGATTCTCCTAACATGGAGTTCCTTTTCGGGCTGGATATGCTCCGAAAGCACCAGTGTAGTATAGATTTAAAAGATAATGTTTTGCGAGTTGGTGGAGGAGAAGTTTCTGTGCCATTTTTGCAAGAAAAAGACATACCATCTCGGTTTCTGGATGAAGAAAGGTACGCTAAGGAAGCATCAAGCTCAGGTGCACCGGCAACAGGAACAGCAGATAGGAGTGGTAGTGCACCGAAAGGAGGCCAGTCTTCCGGAGGAGCTACTGGTGGCACTTCTCAGGAGAGTGAGTTTGAAGCAAAAGTTGCAAAGCTGGTGGAGTTGGGGTTTGGAAGAGATGCAGTGGTACAAGCTCTTAAATTGTTCAATGGCAATGAGGAACAGGCTGCTGGGTTTCTGTTTGGGGGTTTCTAG 1230 0.4472 MRVTVMTADEQILTLDVDPHESVENVKALLEVETQVPLQQQQLLFNGREMSNSEKLSALGVKDEDLVMMVSAAPSGAPTNDLGFNPDGSAVNPAAFQQHIRQDSNLIGQLFQTDPELAQAILGNDLNRIQEILRVRHQQRSELQRQKEEELALLYADPFDVEAQKKIEAAIRQKGIDENWAAALEHNPEGFARVVMLYVDMEVNGVPLKAFVDSGAQSTIISKNCAERCGLLRLLDQRYKGIAHGVGQSEILGRIHVAPIKIGNIFYPCSFLVLDSPNMEFLFGLDMLRKHQCSIDLKDNVLRVGGGEVSVPFLQEKDIPSRFLDEERYAKEASSSGAPATGTADRSGSAPKGGQSSGGATGGTSQESEFEAKVAKLVELGFGRDAVVQALKLFNGNEEQAAGFLFGGF 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g1645 409 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Alju08g1645 409 MobiDBLite consensus disorder prediction 330 368 - -
Alju08g1645 409 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 365 408 IPR015940 -
Alju08g1645 409 Coils Coil 129 149 - -
Alju08g1645 409 Gene3D - 341 408 - -
Alju08g1645 409 Gene3D - 1 81 - -
Alju08g1645 409 SUPERFAMILY Ubiquitin-like 1 81 IPR029071 -
Alju08g1645 409 SUPERFAMILY Acid proteases 182 297 IPR021109 -
Alju08g1645 409 Pfam UBA/TS-N domain 371 404 IPR015940 -
Alju08g1645 409 FunFam DNA damage inducible 1 homolog 2 174 321 - -
Alju08g1645 409 CDD UBA_scDdi1_like 371 406 - -
Alju08g1645 409 PANTHER ASPARTYL PROTEASE DDI-RELATED 1 405 - -
Alju08g1645 409 CDD RP_DDI 181 304 IPR019103 GO:0004190|GO:0006508
Alju08g1645 409 Pfam Ubiquitin family 3 70 IPR000626 GO:0005515
Alju08g1645 409 CDD Ubl_Ddi1_like 1 70 IPR033882 -
Alju08g1645 409 Gene3D Acid Proteases 175 321 IPR021109 -
Alju08g1645 409 SMART uba_6 370 407 IPR015940 -
Alju08g1645 409 SUPERFAMILY UBA-like 358 408 IPR009060 GO:0005515
Alju08g1645 409 Pfam Aspartyl protease 174 296 IPR019103 GO:0004190|GO:0006508
Alju08g1645 409 SMART ubq_7 1 72 IPR000626 GO:0005515
Alju08g1645 409 MobiDBLite consensus disorder prediction 336 368 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g1645 1 70 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 27.143 1.95e-06 45.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju08g1645 08 13324285 13330486 Alju08g1645 08 13324285 13330486 ECH