Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g1628 ATGTCTCCTCGGATCCCAGCCCAGGCGGTTGCCCGCGCTGACACGCTCCACGTTGTGGGGAGAATTCTGGGGCTTTATCCTGTTCTTCTTGTTCAGTCCAAGTCTGAAACTGCAAATCAACTAAGGACTGATCAACATTCTTTTCCGCTGAACAATGTTTATTCTGAGCCTTGGTGGCGTGGCGGTGGGTATCCTATGACCCAAGCAGTGGCTGGGGCAAATGCATCGAATTCATCCTCACCGGAATGCCCTAATGCTGATTCTGAATCAAATGATGGTCAATCTTTGTCCAATAGTGGGTTGAATGAGGAAGATGATGATGCCTCTAAAGAATCACCAGCTGCAGCTCACAATCAATCAGGAAATTACGTTCAAGAACACCAAGGGATGCAGCATGCTTCATCGTCTGCGCCATCCATGCGAGATGAATGCTTCACACAGGCTCCACAGCTCGAACTTGTTGGTCATTCAATAGCATGTGCTTCACATCCTTATCAGGATCCGTATTTTGCAGGACTGATGGCGGCTTATGGTCCCCACCAGCTGGGATATCCTCCTTTTATGGGAATGCCACAGGCCAGAATGCCTTTGCCCCTTGAGATGGCACAAGAACCTGTTTATGTAAATGCGAAACAATACCCAGCAATTCTTAGGCGTAGACAAGCTCGGGCAAAGGCAGAGCTTGAGAAGAAGCTAATAAAAGTTAGAAAGCCATACCTCCATGAATCTCGGCATCAGCATGCAATGAGGAGGGCAAGGGGTACCGGAGGTCGCTTTGCAAAGAAAAATGGTGCTACTGAGGACTCTGGCAAAGAAAAGGATGTGGGATCTGGTCCATTGGGATCTTCACAATCAGTTAGTTCATCTGGTTCTGAACCTTTACCCTGTGAGTCTGCTGAAACCTGGAACTCTCCTAATATGCAACAAGAAGATGCCCGAGGATATAAACTTCCTGACCATTATGAAGCACACAACTATGCAAACAATAGTGGCCCATATCATAATCATAGTGGCTTGCAATCTTCCACCTACCATTTGCACTCAGGTGAAAGAGTCGAGGAAGGGGACTGTTCAGGACAACAGAGGGGGAGTATCTCTTCTGAACACACTACACAGAGGCGTCTTGCGATTCAGTAG 1137 0.4767 MSPRIPAQAVARADTLHVVGRILGLYPVLLVQSKSETANQLRTDQHSFPLNNVYSEPWWRGGGYPMTQAVAGANASNSSSPECPNADSESNDGQSLSNSGLNEEDDDASKESPAAAHNQSGNYVQEHQGMQHASSSAPSMRDECFTQAPQLELVGHSIACASHPYQDPYFAGLMAAYGPHQLGYPPFMGMPQARMPLPLEMAQEPVYVNAKQYPAILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMRRARGTGGRFAKKNGATEDSGKEKDVGSGPLGSSQSVSSSGSEPLPCESAETWNSPNMQQEDARGYKLPDHYEAHNYANNSGPYHNHSGLQSSTYHLHSGERVEEGDCSGQQRGSISSEHTTQRRLAIQ 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g1628 378 MobiDBLite consensus disorder prediction 359 378 - -
Alju08g1628 378 MobiDBLite consensus disorder prediction 238 257 - -
Alju08g1628 378 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 55 323 IPR001289 GO:0003700|GO:0006355
Alju08g1628 378 MobiDBLite consensus disorder prediction 238 306 - -
Alju08g1628 378 MobiDBLite consensus disorder prediction 70 118 - -
Alju08g1628 378 MobiDBLite consensus disorder prediction 328 346 - -
Alju08g1628 378 ProSiteProfiles NF-YA/HAP2 family profile. 202 262 IPR001289 GO:0003700|GO:0006355
Alju08g1628 378 ProSitePatterns NF-YA/HAP2 subunit signature. 207 227 IPR018362 GO:0003677|GO:0016602
Alju08g1628 378 MobiDBLite consensus disorder prediction 322 378 - -
Alju08g1628 378 SMART cbf3 201 262 IPR001289 GO:0003700|GO:0006355
Alju08g1628 378 MobiDBLite consensus disorder prediction 70 102 - -
Alju08g1628 378 Gene3D - 202 264 - -
Alju08g1628 378 PRINTS CCAAT-binding transcription factor subunit B signature 205 227 IPR001289 GO:0003700|GO:0006355
Alju08g1628 378 PRINTS CCAAT-binding transcription factor subunit B signature 236 259 IPR001289 GO:0003700|GO:0006355
Alju08g1628 378 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 204 259 IPR001289 GO:0003700|GO:0006355
Alju08g1628 378 MobiDBLite consensus disorder prediction 278 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g1628 Alju-ChrAlju08 13148762 13153288 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g1628 53 304 CCAAT-HAP2 Transcription Factor Family AT5G12840 54.054 1.06e-76 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Alju08g1628 CBFB_NFYA 2.3e-26 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju08g1628 08 13148762 13153288 Alju08g1628 08 13148762 13153288 ECH