Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Alju08g1610 | ATGGCCATGTATTCTCATCATCCAGATGAAGTTCATTTTTTGGTCCAACGTGAAGATGAAGAAGTTGAAGTTCAATACACATGCAATGTTCATCGAGATGACATATTTGTCCCTTTTTATCACAATTTAATTTTCAGAGGTCCTCCCTATGGCAATCGATACTTTAAAATAAGAGTCAACTGTACGAACCGTGAGTGGCTATCTCCTGACCCAGGCCTTTATTCATCTACGTCCAGAAATTATTTCTTCGATGCCCCACTAAATTTGATAGAGCAAATCATAAGTCCAATTCTTCTTCGTCACAATATTCCTCAAGATTTTTGCAACTCCATGATAACAAAAATCTTGGAAGTTGCACAAGATGTGGCTAATACTACTGGTAGAATTCGTCCGATTTTATGCATGGCCGTGGATATTATGGTCGACACTTTCTATTACAACCATGAGTATAGCCAAGATGTGGAGGAATCTATGGAGGATCAAACTCAGGCACTTGTTCCTGCGAGTAAAGCGTCGATCGAAGAATTGGAAAGAGTGAAGATTGGAGGAGCAGGAGGAGAAAAAGAAGAAGGGCCTAGTGATTGTTCTATTTGTTTGGAAGATTTTAAAGCTGGTGATGAAGCTATTCGTATGCCTTGCAAGCATTTGTTTCATTCAAGTTGCATTCTTGAGTGGTTGCAACGTAGAAATATTTGTCCTTTGTGTCGTTTTGAATTGCCCCCTGCATTAGATGTTGATTAA | 741 | 0.3914 | MAMYSHHPDEVHFLVQREDEEVEVQYTCNVHRDDIFVPFYHNLIFRGPPYGNRYFKIRVNCTNREWLSPDPGLYSSTSRNYFFDAPLNLIEQIISPILLRHNIPQDFCNSMITKILEVAQDVANTTGRIRPILCMAVDIMVDTFYYNHEYSQDVEESMEDQTQALVPASKASIEELERVKIGGAGGEKEEGPSDCSICLEDFKAGDEAIRMPCKHLFHSSCILEWLQRRNICPLCRFELPPALDVD | 246 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Alju08g1610 | 246 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 144 | 240 | - | - | |
| Alju08g1610 | 246 | SUPERFAMILY | RING/U-box | 194 | 242 | - | - | |
| Alju08g1610 | 246 | FunFam | E3 ubiquitin-protein ligase RNF181 | 155 | 242 | - | - | |
| Alju08g1610 | 246 | CDD | RING-H2_RNF181 | 195 | 239 | - | - | |
| Alju08g1610 | 246 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 153 | 243 | IPR013083 | - | |
| Alju08g1610 | 246 | ProSiteProfiles | Zinc finger RING-type profile. | 195 | 236 | IPR001841 | - | |
| Alju08g1610 | 246 | Pfam | Ring finger domain | 194 | 236 | IPR001841 | - | |
| Alju08g1610 | 246 | SMART | ring_2 | 195 | 235 | IPR001841 | - | |
| Alju08g1610 | 246 | SMART | ringv_2 | 194 | 236 | IPR011016 | GO:0008270 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Alju08g1610 | Alju-ChrAlju08 | 12927546 | 12928286 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Alju08g1610 | 163 | 240 | C3H Transcription Factor Family | AT1G14200 | 47.436 | 5.49e-20 | 82.8 |