Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g1607 ATGATGTCTTATCCCAGAAGATCAAGGTATTCTCGATCACCTTCTCCATACAAGCGATATGATAGGTCTGTCTCTAGGTCTCCGTCTAGGTCAAGGTCTAGAAGTTTTTCAAGGAGCCCTTCAAGAGATGCAGAGAATCCTGGTAACAACCTGTATGTTACAGGCTTGTCTGCACGGATTACCAAGAGAGATCTGGAGAAGCATTTTTCTAGTGAGGGAAAAGTGATTGATGTTCATTTAGTTGTTGATCCTTGGACAAGAGAATCACGAGGGTTTGGATTTGTGACAATGGGAGCTCTTGAGGAGGCTGACCGATGCATAAAGTATCTCAATCACTCTGTGCTAGAAGGGCGTGTCATTACAGTAGAGAAGGCATATCTTTTAATCACTGATTTTAGTTTTAAATGCTGA 411 0.4209 MMSYPRRSRYSRSPSPYKRYDRSVSRSPSRSRSRSFSRSPSRDAENPGNNLYVTGLSARITKRDLEKHFSSEGKVIDVHLVVDPWTRESRGFGFVTMGALEEADRCIKYLNHSVLEGRVITVEKAYLLITDFSFKC 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g1607 136 SMART rrm1_1 50 123 IPR000504 GO:0003723
Alju08g1607 136 MobiDBLite consensus disorder prediction 29 50 - -
Alju08g1607 136 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 49 127 IPR000504 GO:0003723
Alju08g1607 136 Gene3D - 3 126 IPR012677 -
Alju08g1607 136 SUPERFAMILY RNA-binding domain, RBD 8 125 IPR035979 GO:0003676
Alju08g1607 136 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 45 125 - -
Alju08g1607 136 MobiDBLite consensus disorder prediction 1 50 - -
Alju08g1607 136 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 51 120 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g1607 Alju-ChrAlju08 12912735 12914292 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g1607 45 129 Eukaryotic Initiation Factors Gene Family AT1G49760 32.941 3.44e-07 46.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju08g1607 08 12912735 12914292 Alju08g1607 08 12912735 12914292 ECH