Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g1605 ATGATAGTGGACGAGTTTTTTGTTGGTGTGTTACTTCTACGATGGGTTACTAATTTTACTCTTGCCATATGAGGATTTTCATCATCTTCTTCTAAGATGTCCTACTCCAGAAGATCAAGGTATTCGCAATCACCTCTGTACACGCCATATGGTAGGTCTGTTTCCAGGTCTCTGTCAAGGTCAAGATCTAGGAGCTTTTCAAGGAGCCCATCAAGAGATGCAGAGAATCCTGGCAACAATTTGTATGTTACAGGGTTGTCTCCTCAGATTACCAAGAGAGAATTGGAGAAGCATTTTGCAAGCGAGGGAAAAGTGATTGACGTTCACCTGGTTGTTGATCCATGGACAAGAGAATCACGAGGGTTTGGATTTGTGACAATGGAAACTGTTGAGGAGGCTGACCGTTGTGTGAAGTATCTGGATCGCTCTGTTCTAGAAGGGCGTGTCATCACAGTAGAAAAGTTTCCATGGCAGCAGATCATTGGGATTGCTAGAAGAAGTCGTGGTCGAACCCCAACACCTGGGAGGTATCTTGGGCTAAAGACTGTTCGAGTGCGTCATCGCTCTTCGAGCTATTCTTCTCGTCGTTCCCCTAGTTATTCTCCTCACAGAAGGAGCTACAGTGGATCACCATATTCATCTGATCGCAGTAGGAGTCGTTCTTATTCTCCTTCTCCTTATCGCAGTTGGCGGAGGTCTTACTCCCCATATTATAGTCGGGATAGATCTTATAGCCCTTATGATCGGCAAAGATCCTATTCTCCTTATTATCGGCACAGGTCACCTCATTATCGTCACAGATCCCACTCACCATACAGCAGGTCACCTGTCAGGAGGCGTGATAGATCGTACTCTCCTTATGACTCGAGGTATGACTCACCTGACGATCGCTATTACTACAGAAGGCGACGTTACAGGTCCATTTCCCCAAGTGCCTCCCCAAGGCCAAGGAGAAGTTCGAGGAGGTATTCCTGCAGTGTCTCTCCGGTGAAGAGGAGGAGTTCACGAAGGAGCTATTCTCGCAGCATTTCTCCCAAGACCAAGAGGCAGTAG 1053 0.4691 MIVDEFFVGVLLLRWVTNFTLAIXGFSSSSSKMSYSRRSRYSQSPLYTPYGRSVSRSLSRSRSRSFSRSPSRDAENPGNNLYVTGLSPQITKRELEKHFASEGKVIDVHLVVDPWTRESRGFGFVTMETVEEADRCVKYLDRSVLEGRVITVEKFPWQQIIGIARRSRGRTPTPGRYLGLKTVRVRHRSSSYSSRRSPSYSPHRRSYSGSPYSSDRSRSRSYSPSPYRSWRRSYSPYYSRDRSYSPYDRQRSYSPYYRHRSPHYRHRSHSPYSRSPVRRRDRSYSPYDSRYDSPDDRYYYRRRRYRSISPSASPRPRRSSRRYSCSVSPVKRRSSRRSYSRSISPKTKRQ 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g1605 350 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 81 150 IPR000504 GO:0003723
Alju08g1605 350 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 79 153 IPR000504 GO:0003723
Alju08g1605 350 MobiDBLite consensus disorder prediction 241 350 - -
Alju08g1605 350 SUPERFAMILY RNA-binding domain, RBD 68 175 IPR035979 GO:0003676
Alju08g1605 350 MobiDBLite consensus disorder prediction 188 225 - -
Alju08g1605 350 MobiDBLite consensus disorder prediction 274 303 - -
Alju08g1605 350 MobiDBLite consensus disorder prediction 192 225 - -
Alju08g1605 350 MobiDBLite consensus disorder prediction 312 333 - -
Alju08g1605 350 SMART rrm1_1 80 153 IPR000504 GO:0003723
Alju08g1605 350 CDD RRM_SF 81 153 - -
Alju08g1605 350 MobiDBLite consensus disorder prediction 63 84 - -
Alju08g1605 350 Gene3D - 27 156 IPR012677 -
Alju08g1605 350 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 71 342 - -
Alju08g1605 350 MobiDBLite consensus disorder prediction 256 273 - -
Alju08g1605 350 MobiDBLite consensus disorder prediction 334 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g1605 Alju-ChrAlju08 12902663 12911400 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g1605 80 202 Eukaryotic Initiation Factors Gene Family AT2G36660 31.452 1.43e-07 51.2