Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g1580 ATGAGTAAGATGCCTGAGAGCAACCCTCCCGCCATTTCAATGCAGGGACCATCTTCGTCTTCTTCAGGGCCTCCTCTGAGCGCCATAGACAGGTTCCTGTGGGGCCAATTCAGTCACTTGTCTGCTCTCTGGCCTAACACTAACAGCAGTGACGACATAGAAGCAAGTTTCATGGAAGGATTCATAGCAAATAATAATAATATTAATGAAGTTCATCACATGATGATCCCTACAGCAGTACTGAATAAACAAGTTCAAGTAGGGAAGAGAATCAACAAGAAAGGCTCTTCTTCTTCCTCCTTGATCAAAGGGCAGTGGACTGACGAAGAAGACAGGAAACTGGTGAAGCTGGTGAATGAATATGGAGTGAGGAAGTGGGCTCAAATAGCTGAGAATTTGGAGGGAAGAGCTGGGAAGCAGTGCAGGGAGAGATGGCATAATCATCTACGTCCTGATATTAAGAAGGATAGTTGGAGCGAGGAAGAAGAGAAAATATTGGTGGAAACACATGCAAAGGTAGGGAACAGGTGGGCAGAGATTGCAAAGAGAATTCCAGGAAGAACAGAGAACTCTATCAAGAACCATTGGAATGCCACCAAAAGGAGACAGAACTCCAAGAGAAACCACAAATCTTCAAACAAAACCTCCACCAACAACAATGGAAGAAAGCCTCCTTCTTCCATTCTTCAAGATTACATCAGAAGCAAGACCCTCTCCAACAACAGCAACAACAACAACAACCCCACCATCGACGAAGATCCCTCTCATTACGAACCTGTGATGGCTGAAGCATTTGATGATGATGAGCTTCTCTTCATGCAACAGTTCTTCCCGGAGAATTATGATCAGAACCAGCAGGTTCAGTCCACTTTGGACTTTTATCGAACAGATGGTGGGAATGAAGGTTATCTTCCTGAACAGAGTGTTGCTGCTACTACTATTGGTGGTCCCATGGTGAAACAAAACCATCATCATCATTCTGATCTGTTTCTGGCTCAGTTATTGAATGGGGTTGGTTATAATCCGTCCATTTTCCGCTGTGATTATGGGAAAGATCAAAATTTGAACATGGGTTTGCAGGTAGGGGATGATCATCAGCAAGCTTGGTATGATGCAAAGAGAGAGATGGATTTGATGGAATTGGTTTCGTCTCAGCTTTCAACTGGCACCAGCAATAGAATGTTCTAG 1188 0.4402 MSKMPESNPPAISMQGPSSSSSGPPLSAIDRFLWGQFSHLSALWPNTNSSDDIEASFMEGFIANNNNINEVHHMMIPTAVLNKQVQVGKRINKKGSSSSSLIKGQWTDEEDRKLVKLVNEYGVRKWAQIAENLEGRAGKQCRERWHNHLRPDIKKDSWSEEEEKILVETHAKVGNRWAEIAKRIPGRTENSIKNHWNATKRRQNSKRNHKSSNKTSTNNNGRKPPSSILQDYIRSKTLSNNSNNNNNPTIDEDPSHYEPVMAEAFDDDELLFMQQFFPENYDQNQQVQSTLDFYRTDGGNEGYLPEQSVAATTIGGPMVKQNHHHHSDLFLAQLLNGVGYNPSIFRCDYGKDQNLNMGLQVGDDHQQAWYDAKREMDLMELVSSQLSTGTSNRMF 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g1580 395 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 98 153 IPR017930 -
Alju08g1580 395 CDD SANT 106 149 IPR001005 -
Alju08g1580 395 SUPERFAMILY Homeodomain-like 101 196 IPR009057 -
Alju08g1580 395 ProSiteProfiles Myb-like domain profile. 150 200 IPR001005 -
Alju08g1580 395 MobiDBLite consensus disorder prediction 1 24 - -
Alju08g1580 395 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 154 204 IPR017930 -
Alju08g1580 395 SMART sant 102 151 IPR001005 -
Alju08g1580 395 SMART sant 154 202 IPR001005 -
Alju08g1580 395 FunFam Transcriptional activator Myb isoform A 102 155 - -
Alju08g1580 395 Pfam Myb-like DNA-binding domain 106 164 - -
Alju08g1580 395 Gene3D - 102 154 - -
Alju08g1580 395 MobiDBLite consensus disorder prediction 186 228 - -
Alju08g1580 395 MobiDBLite consensus disorder prediction 210 228 - -
Alju08g1580 395 Gene3D - 156 225 - -
Alju08g1580 395 CDD SANT 157 200 IPR001005 -
Alju08g1580 395 ProSiteProfiles Myb-like domain profile. 98 149 IPR001005 -
Alju08g1580 395 PANTHER MYB PROTEIN-RELATED 94 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g1580 Alju-ChrAlju08 12477063 12479354 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g1580 22 386 MYB Transcription Factor Family AT5G58850 37.915 2.89e-73 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Alju08g1580 Myb_DNA-bind_6 1.8e-19 CL0123