Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g1578 ATGCCGACCATTGCTGGGCGTAAGCTCGCGAAGGAAGCTCTTTCCGAGACAATGGCCATCGTGCCGGAGAAGACAGCTTCCGATGCCCGATATGACCCCAACTCCACTCCTCGTAAGAGGAAATTGAGATCCGATGGGCCGCTGATTATGGACAGTCGGATCTCTTCACCCATCAAATGGAGCAGTGAGAGCCCAAATCGCGCTGTCACTGCAAAAGAGATGGTTGCTAATGAAGGTGAAATCAAATCGCATAAATCGCCGTCTAAGTCAATGCAGGATAGTTTTGCTGATAAAGCGAAATGGAACCCCAAAGATGGTGAGCAAGTAAGGACAGTGAAGGAGGCATTGCACGTGTCTACGGCACCATCTACAATTGTCTGCCGTGAAGATGAGCAGAATATGGTTTTCGAGTTCTGCAAGTCATGCGTTGAACATAAGAAGGCCGGGAATATGTACATATGTGGGTGTCCCGGTACTGGAAAATCGCTATCCATGGAGAAAGTAAAAGAGCTTTTAGTCGATTGGGTTAAACAGGCAGGCTTCCTTCAGCCCGATGTCTTATCTGTGAACTGTACATCACTTGCAAATACATCTGACATTTTCAGCAAGATGCTTGGATTAAACCAACCACGGGGAAAAAAGACTTCAGCTTCTCCCTTACAACAACTTCAGAGCTTGTATTCTCAGAAGTCGTTAAACCAGAACATGATATTGATGGTGGTTGACGAATTGGATTATCTGATCACCAAAGATAGGGCTGTGCTTCACGATCTCTTCATGCTCACCACTTTCCCATTTTCTAGATGTATACTAATAGGGATATCAAATGCAATTGACCTTGCCGATCGTTTTCTTCCGAGGTTGAAATCATTAAACTGCAGGCCTATAATAGTAACATTTCGAGCATACTCAAAAGACCAGATCCTCAGCATTCTGAAAGAAAGGCTAAGGGAACTTCCTTACACTGTGTTCCAACATCAAGCACTAGAGCTCTGTGCTCGGAAAGTTGCTGCTGCTTCTGGAGACATGCGAAAGGCTCTTTGTATTTGCAGGAGTGCAATTGAGATGCTGGAGGCAGAAATTAGAGAATCTATTGGCCTTTCAGAAATTTCATTGGAAGAGAAAGCTTCCCGGCGACAAAATATAGCTCCTGACCCTGATCATGTAAAAAATCAAGAATTTGATGCTGTAAGGATTGATCATATGGCTCTTGCCTTGTCCAAAACATATAGATCTCCTGTGGTGGATACAATACAATCTCTACCACATCATCAACAGATTATCCTTTGCTCTTCAATGAAACAATTCCGTGGAGCAAAGAAAGATATAATCCTTGGCGAGTTGTACAAATCTTACACGGGCATATGCAAATCATCACTGATTCCTCCGGCTGGAATTTTGGAATTTTCAAACATGTGCAGAGTATTGAATGATCAGGGGCTTATTAAACTAGGACCATCACGGGAGGACAAATTGAAGAGGGTGACACTAAACATAGATGAAGCTGATATTACCTTTGCATTGCAGGGAATTCGTTTCTTTAGAAACTTTGACCTCCAGCAATGA 1566 0.4342 MPTIAGRKLAKEALSETMAIVPEKTASDARYDPNSTPRKRKLRSDGPLIMDSRISSPIKWSSESPNRAVTAKEMVANEGEIKSHKSPSKSMQDSFADKAKWNPKDGEQVRTVKEALHVSTAPSTIVCREDEQNMVFEFCKSCVEHKKAGNMYICGCPGTGKSLSMEKVKELLVDWVKQAGFLQPDVLSVNCTSLANTSDIFSKMLGLNQPRGKKTSASPLQQLQSLYSQKSLNQNMILMVVDELDYLITKDRAVLHDLFMLTTFPFSRCILIGISNAIDLADRFLPRLKSLNCRPIIVTFRAYSKDQILSILKERLRELPYTVFQHQALELCARKVAAASGDMRKALCICRSAIEMLEAEIRESIGLSEISLEEKASRRQNIAPDPDHVKNQEFDAVRIDHMALALSKTYRSPVVDTIQSLPHHQQIILCSSMKQFRGAKKDIILGELYKSYTGICKSSLIPPAGILEFSNMCRVLNDQGLIKLGPSREDKLKRVTLNIDEADITFALQGIRFFRNFDLQQ 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g1578 521 SMART Cdc6_C_2 429 508 IPR015163 -
Alju08g1578 521 Gene3D - 418 509 IPR036388 -
Alju08g1578 521 MobiDBLite consensus disorder prediction 20 53 - -
Alju08g1578 521 PIRSF Cdc6 6 521 IPR016314 GO:0006270|GO:0051301
Alju08g1578 521 MobiDBLite consensus disorder prediction 33 47 - -
Alju08g1578 521 FunFam Cell division control protein 106 291 - -
Alju08g1578 521 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 115 368 IPR027417 -
Alju08g1578 521 FunFam Cell division control protein 292 418 - -
Alju08g1578 521 FunFam Cell division control protein 421 511 - -
Alju08g1578 521 MobiDBLite consensus disorder prediction 78 104 - -
Alju08g1578 521 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 59 515 - -
Alju08g1578 521 Gene3D - 105 292 IPR027417 -
Alju08g1578 521 Pfam AAA lid domain 324 360 IPR041083 -
Alju08g1578 521 CDD AAA 131 294 - -
Alju08g1578 521 Pfam CDC6, C terminal winged helix domain 429 507 IPR015163 -
Alju08g1578 521 Pfam AAA domain 146 262 IPR003593 GO:0016887
Alju08g1578 521 SUPERFAMILY "Winged helix" DNA-binding domain 414 516 IPR036390 -
Alju08g1578 521 CDD Cdc6_C 422 504 IPR015163 -
Alju08g1578 521 Gene3D - 293 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g1578 Alju-ChrAlju08 12444961 12450551 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g1578 1 516 Core DNA Replication Machinery Family AT2G29680 57.519 0.0 575