Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g1561 ATGACAAATTTACCCTTATCTCTTATTCCCATTCCTTTCATCCTCTTCTTCCTTTCTCTGCTCTTACCGACTCCCGTCAACGGCCTTGGCTCTGCATCAACCACCGCCGTAGTCTATGGAACCGGTACTGTCTGCGGCATTGTTGCCGGCCAACCCACCCAGAGGATTCTATGCTATCAAATCGGTCTGACTATCCAAGTCCATCCCAATGTCTCCTTCCAAGCCATCTCCGGTGGCCGGAGCTTCTTCTGCGGCCTCCTCTCCGGCGGATTCACCCTCCTTTGTTGGGACACCACAGATTCATACTCTCCCTTTCAGCCGAGACGCTTGTATCACAGCACCACCGTCTCAATGACTGATCTAACAGTTGGAGATACTCAGGTTTGTGCCAGAGCGTTGAACACTGGTATTGTAAGATGCTGGAGAGGAAAAGACGGAAATGGCCATGAGTTTCCTTCTCCTAATGAGGACCTTTATTTTCGCGGGGTCACATCTGGGTGTGGTTTTTCTTGTGGGATTCTGAAAGAAAACAATCGTGTTCATTGTTGGGGTCAGAGAGAAAGTAATGGACATGATATTCAGAGACAGTTTAGGAATCTTTCAATGTCAAGCCTAGTTGGAGGAGAATCCCATGTTTGTGGTTTGACCACTAATGGAGATTTGGTCTGTAAAGGAAGCAATAACTCTGGCCAATTGAATGTTCCTTTCGGTTCACCTTCAGAGTTCTCCAGTCTTGCATTAGGATCCAACTTCACTTGTGCCATTAGAAGCAAAAATGGTCTGGTCATGTGCTGGGGAAGAATCAACATGTCTGAGATAGAGAGTGACATGATTCAGAATGTTTCATTCGACTCAATTGTTGCTGGTTTGGATTATGTTTGTGGGTTAATGACAGCGAATTTGTCTGTGATCTGCTGGGGACCAGGTTGGTCTGGAAGGCTTAATAATAACAGTAACTCTCATACAACAGATCTTCCTTCTCTGGGAATGATAATCCCAGGTCCATGTGTTAAGGATTCTTGTAGTTCTTGTGGTACATATCCGAACTCCGAGGTTCTCTGTCAAGGTTCTGGAAGAATATGCTATTCCTGCCAAACAGAGAATCCACTCGCAGTGCCATTACCAATCACACCCCAACCACCATCACCATCTTCACCAAATTCTTCAACCCAACCTGCAGAAACAAGATACACAAGAGAAAGATTGATACTTCTGATTCTTGGATCAGCTGGTGCTTTTGTGGGTCTCTGTTCAGTTATTTTCTGTTTGTGGTTCGGAACATGTCGTTTATTATTGCAGAGAAAATCTGACAATAATTTAGTTCAAGCCACAAACACTGAAACCGATGTGGATAACATCACTTTTCCCGGTGCTTCAACCATAGACACAACCATAAGATCATTCTCCAGCAAACGACAGAATTCACGGACATTAAGGGGCTACAGAAGAAGTGGGTCATCCTCCGTCGTTGTAATAGACAAGACGGAGACATTCACGTTATCAGAACTCGAGACAGCCACAAACAACTTCTCCATTGACAACAAAATAGGCTCCGGAAGCTTCGGCATTGTGTACAAAGGAAAGCTAGAAGATGGGCGTGAAGTAGCAATCAAACGAGGAGAAACCTGCACGAGAAAGAAGAAATTCCAAGAAAAAGAAAACGCATTCGACTCAGAAGTTGCTTTGTTATCTAGGCTTAATCACAAACACCTGGTGGGCCTCATAGGATTCTGCGACGAAAACGACGAGAAGCTCCTAGTCTACGAATACATAACCAACGGATCACTCCACTACCACTTACACGACAATCACAACACCGAAAAAACCAGCAGTACTGTAAATTCATGGCGGATGAGGATCAAAATCGCACTGGACGCAGCGAGAGGGATCGAGTATCTTCACAATTACGCAGTACCGTCGATAATTCACAGAGACATAAAGTCGTCAAACATACTATTAGACTCAAATTGGAACGCGAGAGTCTCCGATTTCGGATTATCGTTGATGGGCGAGTATGAACAGATATCTGCGAAAGCTGTAGGAACGGTAGGGTACATAGATCCAGAGTATTATGTGATGAACGTGTTGACTGCGAAAAGTGATGTTTATGGATTAGGGATTGTTATGTTGGAGCTTTTGACGGGGAAGAGGGCGGTGTTTAGGGAGGAGGGTGGCGGAGTGTCGAGTCCGGTGGGAGTGGTGGAATACGCCGGGCCGAGGATCGGAGGAGGAGAGCTATGGAGTGTTTTGGATTACAGAGTGGGAGAACCAGATGTGAGTGAAATTGAGGGTTTGGAGATAATGGCGTATAGTGCAATGCATTGTGTGAGATTGGAGGCGAAGGAGAGACCAAGTGTGAGTGAAATTGTGGCGAATCTGGAAAGAGCTTTGGCTTCTGTTGATGGAAGTCCTGGTCGGCTCTCTGTTACGGCCTTCTCTTCCTCTGCTCCGTTTGAATGA 2460 0.4565 MTNLPLSLIPIPFILFFLSLLLPTPVNGLGSASTTAVVYGTGTVCGIVAGQPTQRILCYQIGLTIQVHPNVSFQAISGGRSFFCGLLSGGFTLLCWDTTDSYSPFQPRRLYHSTTVSMTDLTVGDTQVCARALNTGIVRCWRGKDGNGHEFPSPNEDLYFRGVTSGCGFSCGILKENNRVHCWGQRESNGHDIQRQFRNLSMSSLVGGESHVCGLTTNGDLVCKGSNNSGQLNVPFGSPSEFSSLALGSNFTCAIRSKNGLVMCWGRINMSEIESDMIQNVSFDSIVAGLDYVCGLMTANLSVICWGPGWSGRLNNNSNSHTTDLPSLGMIIPGPCVKDSCSSCGTYPNSEVLCQGSGRICYSCQTENPLAVPLPITPQPPSPSSPNSSTQPAETRYTRERLILLILGSAGAFVGLCSVIFCLWFGTCRLLLQRKSDNNLVQATNTETDVDNITFPGASTIDTTIRSFSSKRQNSRTLRGYRRSGSSSVVVIDKTETFTLSELETATNNFSIDNKIGSGSFGIVYKGKLEDGREVAIKRGETCTRKKKFQEKENAFDSEVALLSRLNHKHLVGLIGFCDENDEKLLVYEYITNGSLHYHLHDNHNTEKTSSTVNSWRMRIKIALDAARGIEYLHNYAVPSIIHRDIKSSNILLDSNWNARVSDFGLSLMGEYEQISAKAVGTVGYIDPEYYVMNVLTAKSDVYGLGIVMLELLTGKRAVFREEGGGVSSPVGVVEYAGPRIGGGELWSVLDYRVGEPDVSEIEGLEIMAYSAMHCVRLEAKERPSVSEIVANLERALASVDGSPGRLSVTAFSSSAPFE 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g1561 819 Gene3D Phosphorylase Kinase; domain 1 470 590 - -
Alju08g1561 819 CDD STKc_IRAK 516 795 - -
Alju08g1561 819 MobiDBLite consensus disorder prediction 373 387 - -
Alju08g1561 819 FunFam receptor-like serine/threonine-protein kinase NCRK 484 590 - -
Alju08g1561 819 Gene3D - 202 379 IPR009091 -
Alju08g1561 819 Gene3D - 28 201 IPR009091 -
Alju08g1561 819 MobiDBLite consensus disorder prediction 373 393 - -
Alju08g1561 819 Pfam Protein kinase domain 511 720 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju08g1561 819 SMART serkin_6 510 797 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju08g1561 819 SUPERFAMILY RCC1/BLIP-II 59 185 IPR009091 -
Alju08g1561 819 SUPERFAMILY RCC1/BLIP-II 160 359 IPR009091 -
Alju08g1561 819 ProSitePatterns Serine/Threonine protein kinases active-site signature. 641 653 IPR008271 GO:0004672|GO:0006468
Alju08g1561 819 ProSiteProfiles Protein kinase domain profile. 510 797 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju08g1561 819 ProSitePatterns Protein kinases ATP-binding region signature. 516 538 IPR017441 GO:0005524
Alju08g1561 819 Gene3D Transferase(Phosphotransferase) domain 1 591 803 - -
Alju08g1561 819 Pfam Regulator of chromosome condensation (RCC1) repeat 207 231 - -
Alju08g1561 819 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 201 803 IPR044815 GO:0004674
Alju08g1561 819 SUPERFAMILY Protein kinase-like (PK-like) 486 793 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g1561 Alju-ChrAlju08 12308426 12310885 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g1561 9 808 Receptor kinase-like Gene Family AT3G55950 51.883 0.0 716
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Alju08g1561 Pkinase 1.3e-43 CL0016