Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g1557 ATGTGCAGTGGTTCCAAGAGGAAACCTTCTGAAGCAGGTTTTGTTATGGAGGGAAAATATGGGAAACAAGAGGGGCTGCTTCACAAGACTTCTGTGTTGCTTGAACTTGCAGCCTCAGATGATGTTGTGAGTTTCAAAGATGCGGTTGAACAAGAGGGTCTTGATGTTGACGAAGCATGCTTGTGGTATGGAAGGAGGGTTGGCTTAAAGAAATTGAGCTATGAAGAGAGGACTCCTCTCATGATTGCTTCTATGTTTGGAAGCAAGGGTGTGTTAAGTTATATACTCGGAACCGGTCATGTCGATGTTAACAGGACTTGTGGATCAGATAGAGCTACTGCCCTTCATTGTGCTGTTGCTGGGGGTTCAGCCTCTTCCCCTGAGGTTGTTAAGCTTTTGATTGATGCATGTGCAGATGTTAGTGCCGTTGATGCTAATGGTAACGAACCCGGTGACTTGATTGTATCCGGGATTAATTCAATCTTCAGTTCAAGGAAGAGGATCCTACAAGCCATACTGAAAGGTAAGGATGTTATTGATGAGGCAAGTCTTTCATTTGTGGATACAGTTAGCCAGGTGGAGGAAAAGCAACAGCCAGATATGGCTGCATCGCGTGTTTCAAAAGACGGGACTGAGAAGAAAGATTATCCTATTGATCTTTCTCTTCCGGACATAAAGAGTGGGATTTATGGTACTGATGAGTTTAGGATGTATACATTCAAGGTAAAGCCTTGCTCAAGGGCTTATTCTCATGATTGGACTGAGTGCCCCTTTGTTCATCCAGGGGAAAATGCTAGGCGACGGGATCCTAGAAAATATCATTATAGCTGTGTCCCTTGCCCGGAGTTTCGGAAGGGATCATGCAGCAAGGGAGATGCCTGTGAGTATGCACATGGTATTTTTGAGTGCTGGCTTCACCCTGCCCAGTACCGGACACGGCTTTGCAAGGATGAGGATGCTTGCAACAGAAGAGTTTGCTTTTTTGCTCATAAGCCTGAGGAGCTTCGCCCGTTGTATCCTTGTACCGGTTCAGCTATACCTTCTCCTAGATCATTTTCATCTAGTTCTTGTTCATTGGATATGGGATCGCTTAGTCCTCTCTCACTGGGTTCTTCATCTGTCATGATACCTCCAGTCTCAACACCACCTCTGACTCCTACTGGTGCATCTTCTCCCGTTGGTGGAACCATGTGGCAGACCCAATCTAATGGAGTCCCTACCCTGCAATTGCCAAGAAGCAGGCTAAAAACTGCTTCAAATGCTAGAGATGTTGATTTAGACCTTGAGTTACTTGGACTTGAAAATCACCGGCGCAGGCAGCAGATGATGATGGATGAGATTTCTGGTCTTTCCTCGCCATCAAGCTGGAAGAATTCCATGCCTGATAGTCATTCTTTTCCTGTCTCTTTCAGTGATCAAGCTGGAGAGTTTAATAGGCTTGCAGCAATGAAGCCTACCAACCTTGATGACATTTTCGGGTCATTTGATCCATCAGTTTTGCCTAAATTACAGGGAATTTCTCTAGACACTGTTGGATCTCAGTTGCAATCTCCAACCGGGTTCCAGGCGCTTCAGAATGCAAACCTGCATCTTCGAAGCTATTCTTCTGGACTGTCCAATTCAAACGGGATGGGATCGCCGTCTTCTGTGAATGATCATCCTTCAGCATCAGCAGCAAACACAATGGCCTTGAACGCAAGACTTTCTGCCTTTTCTAAGAGAAGCCAGAGCTTTATTGAGCGTAGCAGTGCAATAAACCGTCATCCGGAGCTTTCTTCTCCGGTTTCTTCAACAACAAAAGCTTCTGCCTTATCAGACTGGGGATCCCCTGATGGAAAGTTGGACTGGGGCGTCCATGGAGAAGAGTTGAATAAGCTGAGGAAATCTGCTTCCTTCGGATTGCGAAGCACTAGAAATACCCAAGTGCGAGAAAATCTCGATGAACCAGATGTTTCATGGGTTCATTCACTTGTAAAAGATGCTGCGCCGCCAGAATCTGGTCCCTTTAGTGTTGAAGAACAGCAAAAGCAGCAGCTGCAATGCCATCGTAACAATGGAACCGATGTAGTTCCAGCTTGGATGGAACAATTTAACATTGAGCAGGAGCAAATGGTAGCATGA 2121 0.4573 MCSGSKRKPSEAGFVMEGKYGKQEGLLHKTSVLLELAASDDVVSFKDAVEQEGLDVDEACLWYGRRVGLKKLSYEERTPLMIASMFGSKGVLSYILGTGHVDVNRTCGSDRATALHCAVAGGSASSPEVVKLLIDACADVSAVDANGNEPGDLIVSGINSIFSSRKRILQAILKGKDVIDEASLSFVDTVSQVEEKQQPDMAASRVSKDGTEKKDYPIDLSLPDIKSGIYGTDEFRMYTFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFRKGSCSKGDACEYAHGIFECWLHPAQYRTRLCKDEDACNRRVCFFAHKPEELRPLYPCTGSAIPSPRSFSSSSCSLDMGSLSPLSLGSSSVMIPPVSTPPLTPTGASSPVGGTMWQTQSNGVPTLQLPRSRLKTASNARDVDLDLELLGLENHRRRQQMMMDEISGLSSPSSWKNSMPDSHSFPVSFSDQAGEFNRLAAMKPTNLDDIFGSFDPSVLPKLQGISLDTVGSQLQSPTGFQALQNANLHLRSYSSGLSNSNGMGSPSSVNDHPSASAANTMALNARLSAFSKRSQSFIERSSAINRHPELSSPVSSTTKASALSDWGSPDGKLDWGVHGEELNKLRKSASFGLRSTRNTQVRENLDEPDVSWVHSLVKDAAPPESGPFSVEEQQKQQLQCHRNNGTDVVPAWMEQFNIEQEQMVA 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g1557 706 FunFam Zinc finger CCCH domain-containing protein 66 232 300 - -
Alju08g1557 706 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 279 299 IPR000571 GO:0046872
Alju08g1557 706 SUPERFAMILY Ankyrin repeat 53 150 IPR036770 -
Alju08g1557 706 Gene3D - 27 174 IPR036770 -
Alju08g1557 706 Gene3D - 275 337 - -
Alju08g1557 706 Pfam Ankyrin repeats (many copies) 76 134 IPR002110 GO:0005515
Alju08g1557 706 ProSiteProfiles Ankyrin repeat region circular profile. 110 144 - -
Alju08g1557 706 ProSiteProfiles Ankyrin repeat profile. 110 145 IPR002110 GO:0005515
Alju08g1557 706 SMART ANK_2a 110 142 IPR002110 GO:0005515
Alju08g1557 706 SMART ANK_2a 75 105 IPR002110 GO:0005515
Alju08g1557 706 ProSiteProfiles Zinc finger C3H1-type profile. 279 301 IPR000571 GO:0046872
Alju08g1557 706 SMART c3hfinal6 274 300 IPR000571 GO:0046872
Alju08g1557 706 SMART c3hfinal6 309 332 IPR000571 GO:0046872
Alju08g1557 706 PANTHER UNKEMPT FAMILY MEMBER 35 660 IPR045234 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g1557 Alju-ChrAlju08 12254931 12257051 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g1557 28 701 C2H2 Transcription Factor Family AT5G12850 39.607 1.83e-147 444
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Alju08g1557 Ank_4 4.7e-06 CL0465