Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g1550 ATGGCTGTGGAGGAATTGGAGTCCCCTCTTTGCAAAAAGCGCAAACGAGGGTATGGAAGAAGAAAGCTCATCGTCAATGATAGAGTCGAGGTGAGGAGTATGGAAGATGGCTTTTTAGGTTCATGGCATCCAGGGACTGTGATTCATTGTGGGAAGCAGAAACGTCATGTCCGATATGACAATCTTTTAGATGAGGATGGGTCAACTTATCTTGTCGATATCGTGGATGTTCCAGATATTTTGGATGGCGAAAGTTCCACAATTTACAATGAACGTGGACTTATTAGACCAGTACCACCTTTGAAGCAGTTTAGTAATTGGGACCTTCCGTTTGGTCTCTGTGTTGATGTGAATTATGAAGAAGCTTGGTGGGAAGGTATTATTTTCGATCACAATGATGGGATGAAGGAGAGAGCCATATTTTTCCCAGATTTGGGTGATGAAATGAAGGTCCAAATTGATCATATACGTATTACTCATGATTGGAGTGAAGTTACAGAGGCATGGGAGAGACGAGGCATGTGGGTATTTCTTGAATTGGTTGAAGAGTTTGAACAGAATTTTTATGTTGCAGTTTCAGTAAAGCAAATCTGGTATGATGTGCGTGCCAAAGAAAATTTCAGTAAGATTAAAGACTGGACTTGTAATGTGAAAGACTTGTGGAGAGGTCTGGTACTTGAGGTAATTAATGACTACTTATTACTTACAATGGGAGAAATTCTCAAGGCCATCAATCTTTCAAAAGATGATCGCTTCATGGAAACTCCAGGACCAGAGTCAGGTGAACCTACTGCTGATATTCACTTAAATCTTGAAAGAAGTTCAGACAAATTTCCTTCTGTTTCAAATTCTGATGATCGGTTAACTAGCAAATCAAATGTTCTTTATGACGCTGGTCCTAATAATTCATTTGTCAATTGCATAACTTTGGCTGACAACCATTTGGGAAAAGGTGACTCGTCAAATTTCTTAAATGCTGATCAAAACAGTGGTAACATCATTCATATCCAGGAGAAATATGATTTGGAGATTTTTGGGGGGGGAGTGTCAAATACGCCTGAGGTGGCAGACTTAGACATGTCCTTCCCTGAGAATGAAGGATTGATGCAGCAGGAATCTATATTACCAGATATTCCTGAAGGAACTTCTGGTCAGGATTGTGGTACTGCTGGTGAAGTAAATTATGGTGCTGGGAGTTATAAAAGTAATAGACAAGGGGGATTATCAACTTGCAAAAGGTCGACTGAATGGAAACCTCTGATACTTTCTGAAGTTGAACTCTGCCCTGATTCTGTTCATCAATATGCACTTGCATCTGGGAGGAAGATTAGGGAACAACTGAAGACAGATGTCAGAAAACATGTTGCATATCTTGGATGGAAAATTGAGTGGATGCAACATCTTAATGGCAATCAACAACAAAGACAATTTAGGTACACCTCACCTGAGATAGAGGGAAAACAGGTAGTTTACATGACACTTCGTGAAGTTTGTCAACATATTGAAAAGGACACCAATATGGACTCTTTGTTGTCCAAAGAGGATCAGAGAAGGACTTGTTCAATTGACAGTGATGTTTCACATCCTGAAATTTTGCCACTACCTGATGTTGAAGACATAGTTGAACGCGACTATTACCCTGAAGCTGTTTTGAGATATTACTTGCTTCCATTAGAGAGTGGCTACGCTGCTGTTAAAAGGATTGTGGTGCCAAAGGCAAGAAAACACCTGTTAGCAGAAGGATGGAATTTTGAGAATCCAACCATAAGAGGAAGGGGAGTTATCTACATTTCACCACAAAATCAGCGTTTTGGATCACTTCGAGCAGCATGCAGAGAATGTATTAAAAAATGTCTTCCTAAGTGGATTAGTTCCGGAGTGATACCTCTGGATGTTTCAAGGATAAATGAAGAGAACACTGGTCTGGTTGACAGTGATGACTTATTATGCTGTGTGTCCCAATTGCTTCAAAATGAGCCTGAATTGTATAATGTAAATGGTGCACCAGCAAGCAGATCAATTGGTCAATGCAAGCCAAAAAGCTCAAGGAAGCTAAAGTCCCAAGATAATCAGAGAGAGATGTATTCTACATCTGTCAGCGATATATCACTTCCTGCAATTTTGCCACCTCATTCTGTTGAAGATGTAATTGAACCTGAATTTTGTCCTGAAGCTGTTTTGAGATATTACTTATATTCATTGGAGAAGATCCCCAAGGATGTTAAAAAATGCATGATACTAAAGGCAAGAAAACACTTGTTAGCTGAAGAATGGAATTTTGAGTATCCAGCCATAAAGGGAAGGGGAATGATCTATATGTCACCACAAAATGTGCGTTTTGGCTCACTTCGAGTAGCATGTGAAGCACATATTAAAGAATGTCTTCCTAAGTGGATTAGTTCTGGAATGATGCCTGTAGATGGTTTGGGCATAAATGAGGAGAAAATGAGTCAAGTTGACAGTGATGAACTAGCATCCTATGTGTCCCAATTGCTTCAAAAGGAGCCTGAATTGTCTTATCTAAACGAGGTACCAGAAAGCAGGTCAACTGGGCATTGCAAGCTCAAAACCTCTAGGAATCTAAAATCTAGGCCACCGAAGATCCAGAAAAAAAGATTGCCTATTCGGCTACAAAGATCAAGCAAAAGGGTGCAGAAGGTGTGTGCTCCTTGTTCATCAAACCAGAAAGCTCAAAATGTCCTGTCCTGGTTAATAGACAGCAATGTGTTGTTACCAAGATCTAAGGTACATTACCAGGAAAGAGGCACAGGTCGTCCTATAACTGAGGGGCGTATAACTCGTGATGGAATCAAGTGTAGCTGTTGTCAGAAGCTATACAGTATTGGTGGCTTTGGAGGTCATGCAACTGGTCAACGTAATTGCAGGTCAGCAGCTGCTAATATTCTTTTGGAGAATGGCAGGTCTCTCCTAGATTTCCAGAGGCAGATAATGAATGAACATAGGACAAGAGGAACCACAAAAACACCATCGAGAAGTGGATATCTAGATGAGAATGATGGCATTTGTTCTGTTTGTCAATATGGTGGTGAACTAATTTTATGTGATAATTGCCCATCTTCTTTTCATCAAAGCTGCATAGGTTTGGAGGATATCCCTGAAGGTGACTGGTTTTGCCCAGCCTGTTGTTGTGGAATTTGCCACCAAAGTAAAACTGAAGGGCCTGATGATGAAACACTTTTGACTTGCAGTCAGTGTGAACATAAATATCATGCTAAGTGCTTGGGAAAAAGGTCTGTATCAATGTCAGGAAGATATCTAAAAAATTGGTTTTGTGGAAAAAGTTGTGAACAGATATATGCAGGCCTTCATAAGCTATTAGGAGAACCTATTGCAGTGGGTGTGCACAATTTGAACTGGACGTTGCTGAAGTGTGTTGACTATGAGACTTGTGATGTTGGGAATGGTAGAAATGACCTAGAGGTGGAGAGTTACAGCAAACTCAATGTGGCGCTTTCAGTGATGCACGAATGTTTTGAGCCCTTGAAGGAATCTTACTCAGGCAGGGATGTCGTGGAAGATGTTATTTTCAGCAGACGGTCAAAGCTTCATCGATTGAACTTCCAAGGTTTCTATACTGTACTTCTGGAGAGAAATGAAGAAGTGGTAACTGTGGCAACTGTTAGGGTCTATGGAGAGAAGGTAGCAGAATTACCTCTCGTTGGTACCAGATTTCAGTATCGTCGCCTTGGAATGTGTCGCATTTTAATGAATGAGCTCGAAAAGAGGCTCATGCAACTAGGGGTAGAGAGGATCGTTTTGCCTGCTGTTCCAAGTGTGGTAGATACGTGGGTTAACTCTTTCGGCTTTTCAAAAATGACAAATTCTGAGAGATCACAGTTTCTGGACTGTACTTTTCTTGACTTCCAAGATACCTTCATGTGCCAGAAACTCTTGACCAAGAATCGTCCAGCTCTAGCTTTGTCAACGGAGAGCCATACAAAACCACCTGAAGTTTTATCTGTAAGTGGTGGTACTGGTTTTGATCATCAGTCCAGTCTAGTATCTGAAGTATATCCGGCACAAGATATTGACAGAAATGAGACTATGGATCTACAAACAGTGGACGCTTTTGCCGGCAATGATGGTCATCTTGGTATTGATGCCCCTATGCCAGTTAACACGGTGAAGCCGGCCGAAGAATCGCAGAATGGAAACATTATAGAATGCTCACTTGAAGATGGCCAGCGCTTAAAACATGTTTCCACCAGTAATGCTGCTCCATATAAGTACTACGAGCGAAGGAAAACCAGCATGAAAAGATGA 4284 0.4101 MAVEELESPLCKKRKRGYGRRKLIVNDRVEVRSMEDGFLGSWHPGTVIHCGKQKRHVRYDNLLDEDGSTYLVDIVDVPDILDGESSTIYNERGLIRPVPPLKQFSNWDLPFGLCVDVNYEEAWWEGIIFDHNDGMKERAIFFPDLGDEMKVQIDHIRITHDWSEVTEAWERRGMWVFLELVEEFEQNFYVAVSVKQIWYDVRAKENFSKIKDWTCNVKDLWRGLVLEVINDYLLLTMGEILKAINLSKDDRFMETPGPESGEPTADIHLNLERSSDKFPSVSNSDDRLTSKSNVLYDAGPNNSFVNCITLADNHLGKGDSSNFLNADQNSGNIIHIQEKYDLEIFGGGVSNTPEVADLDMSFPENEGLMQQESILPDIPEGTSGQDCGTAGEVNYGAGSYKSNRQGGLSTCKRSTEWKPLILSEVELCPDSVHQYALASGRKIREQLKTDVRKHVAYLGWKIEWMQHLNGNQQQRQFRYTSPEIEGKQVVYMTLREVCQHIEKDTNMDSLLSKEDQRRTCSIDSDVSHPEILPLPDVEDIVERDYYPEAVLRYYLLPLESGYAAVKRIVVPKARKHLLAEGWNFENPTIRGRGVIYISPQNQRFGSLRAACRECIKKCLPKWISSGVIPLDVSRINEENTGLVDSDDLLCCVSQLLQNEPELYNVNGAPASRSIGQCKPKSSRKLKSQDNQREMYSTSVSDISLPAILPPHSVEDVIEPEFCPEAVLRYYLYSLEKIPKDVKKCMILKARKHLLAEEWNFEYPAIKGRGMIYMSPQNVRFGSLRVACEAHIKECLPKWISSGMMPVDGLGINEEKMSQVDSDELASYVSQLLQKEPELSYLNEVPESRSTGHCKLKTSRNLKSRPPKIQKKRLPIRLQRSSKRVQKVCAPCSSNQKAQNVLSWLIDSNVLLPRSKVHYQERGTGRPITEGRITRDGIKCSCCQKLYSIGGFGGHATGQRNCRSAAANILLENGRSLLDFQRQIMNEHRTRGTTKTPSRSGYLDENDGICSVCQYGGELILCDNCPSSFHQSCIGLEDIPEGDWFCPACCCGICHQSKTEGPDDETLLTCSQCEHKYHAKCLGKRSVSMSGRYLKNWFCGKSCEQIYAGLHKLLGEPIAVGVHNLNWTLLKCVDYETCDVGNGRNDLEVESYSKLNVALSVMHECFEPLKESYSGRDVVEDVIFSRRSKLHRLNFQGFYTVLLERNEEVVTVATVRVYGEKVAELPLVGTRFQYRRLGMCRILMNELEKRLMQLGVERIVLPAVPSVVDTWVNSFGFSKMTNSERSQFLDCTFLDFQDTFMCQKLLTKNRPALALSTESHTKPPEVLSVSGGTGFDHQSSLVSEVYPAQDIDRNETMDLQTVDAFAGNDGHLGIDAPMPVNTVKPAEESQNGNIIECSLEDGQRLKHVSTSNAAPYKYYERRKTSMKR 1427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g1550 1427 SMART agenet_At_2 107 164 IPR014002 -
Alju08g1550 1427 SMART agenet_At_2 21 82 IPR014002 -
Alju08g1550 1427 CDD NAT_SF 1200 1260 - -
Alju08g1550 1427 SUPERFAMILY FYVE/PHD zinc finger 995 1048 IPR011011 -
Alju08g1550 1427 PANTHER PHD FINGER PROTEIN 12 723 1345 IPR042163 GO:0003714|GO:0045892
Alju08g1550 1427 Pfam PHD-finger 1008 1050 IPR019787 -
Alju08g1550 1427 SMART ring_2 1050 1105 IPR001841 -
Alju08g1550 1427 SMART ring_2 1009 1048 IPR001841 -
Alju08g1550 1427 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 983 1049 IPR013083 -
Alju08g1550 1427 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 1185 1284 IPR016181 -
Alju08g1550 1427 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1050 1105 IPR013083 -
Alju08g1550 1427 Gene3D - 1162 1290 - -
Alju08g1550 1427 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 1144 1305 IPR000182 GO:0016747
Alju08g1550 1427 SMART PHD_3 1050 1102 IPR001965 -
Alju08g1550 1427 SMART PHD_3 1008 1049 IPR001965 -
Alju08g1550 1427 Pfam Agenet domain 26 100 IPR008395 -
Alju08g1550 1427 Pfam Tify domain binding domain 930 982 IPR032308 -
Alju08g1550 1427 CDD PHD2_CHD_II 1009 1048 - -
Alju08g1550 1427 ProSiteProfiles Zinc finger PHD-type profile. 1006 1051 IPR019787 -
Alju08g1550 1427 CDD Tudor_Agenet_AtDUF_rpt1_3 25 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g1550 Alju-ChrAlju08 12169582 12176563 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g1550 23 241 PHD Transcription Factor Family AT5G58610 47.982 3.11e-62 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Alju08g1550 Agenet 1.8e-16 CL0049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju08g1550 08 12169582 12176563 Alju08g1550 08 12169582 12176563 ECH