Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g1522 ATGTCAACTTCCGAACAGGATCAAGCCCCTCGCCATCACCTTTCTCAATTCCAATTTCATCTTCTCCATTCCCATTCTCAATTTCATCATGATCGCACTTTCACTTCTCAGCCTTTCTCCTCCTCCTCCTCCTCCCACCAATTCGCTTCTGACGATGCCCATTCTGCTTTTGCAAAGCTTGCCTTGAGTCAAAGACATGAAATTAATTCCAGGCCTCAGATGAGTAATACTAAAGTAGCTCCAAATCTGGGCAAGATAGTTAATATTTCTCGTCTCAAAACTGAGCCTTCCATAATTGGAAAACATCATGGTAAATCAAAAGTCTCAAGAAATGCAAAATCAGGGAATCAAAGATCAAATTCTGAGTCTTCTAATTCAACTCCAGTTAATTGCCGTTATGATAGTTCCTTAGGACTGTTAACCAAGAAATTTGTCAGTTTACTTCAGGGGGCTAAGGACGGTACCCTAGATTTAAATAAATCCGCTGAGATCTTGGAGGTTCAAAAAAGGAGAATTTATGATATTACAAATGTTCTTGAAGGAATAGGATTGATAGAAAAAACATCAAAGAACCATATACAGTGGAAGGGATATCATGGACTGGGGCCAGCCGAACTGGATGGTCAAGTCACCAGATTAAAGTCTGAAGTTGAAGGTCTATATTCTGAGGAATGCCGACTTGATGATACTATAAGGAAAAAGCAAGAGCTCCTAAGAACTTTGGAGGAAAAAGAAAACCATCAAAAGTACCTTTTTTTGACTGAGGAAGGTATTGTTAGCCTTCCATGCTTCCAGGATCAAACACTCATTGCCATCAAGGCGCCCCAAGCTAGTTTCATTGAAATTCCTGATCCTGATGAGGATAATGATTTCCGGCAAAGGCAGTATAAAATGATCGTTAGAAGCACCACCGGACCAATAGATTTGTACCTCTTGAGCAAACACAATGCCAATTATGAGGCTGTTGGCGTCAACCCGGCTCAAGCCCCGTTAATAGATCCTTCACAGAATGGTGACCAGTGTGGGTTGAAGAGTGCGGGATTACGTTTAGAAAACCAAGATGCCCAGAAAAATACTTCTCTAAGTTTTGGCTTGCTAGACTCGGAGCAATCTGGCATTCAGAAAATTACACCAATGGATTTTGATATGGAAGATGACTACTGGCTCCAATCAGATCATGGAGTGACCCTAACGGATTTGTGGGCGAATGAGGAATTAGTTCACATAGATGAGGTCCTTCAAGACGATTACTCGAATGGGGGTGGTGCATTTACTCAAACACCCAGCTTCCAGGGTAGATGTGGTCAATAG 1311 0.4172 MSTSEQDQAPRHHLSQFQFHLLHSHSQFHHDRTFTSQPFSSSSSSHQFASDDAHSAFAKLALSQRHEINSRPQMSNTKVAPNLGKIVNISRLKTEPSIIGKHHGKSKVSRNAKSGNQRSNSESSNSTPVNCRYDSSLGLLTKKFVSLLQGAKDGTLDLNKSAEILEVQKRRIYDITNVLEGIGLIEKTSKNHIQWKGYHGLGPAELDGQVTRLKSEVEGLYSEECRLDDTIRKKQELLRTLEEKENHQKYLFLTEEGIVSLPCFQDQTLIAIKAPQASFIEIPDPDEDNDFRQRQYKMIVRSTTGPIDLYLLSKHNANYEAVGVNPAQAPLIDPSQNGDQCGLKSAGLRLENQDAQKNTSLSFGLLDSEQSGIQKITPMDFDMEDDYWLQSDHGVTLTDLWANEELVHIDEVLQDDYSNGGGAFTQTPSFQGRCGQ 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g1522 436 CDD E2F_DD 209 315 IPR032198 GO:0046983
Alju08g1522 436 PANTHER TRANSCRIPTION FACTOR E2F 101 408 IPR015633 GO:0000978|GO:0006357
Alju08g1522 436 SMART E2F_TDP_2 132 197 IPR003316 GO:0005667|GO:0006355
Alju08g1522 436 SUPERFAMILY E2F-DP heterodimerization region 209 314 IPR037241 -
Alju08g1522 436 SUPERFAMILY "Winged helix" DNA-binding domain 132 195 IPR036390 -
Alju08g1522 436 Coils Coil 227 247 - -
Alju08g1522 436 MobiDBLite consensus disorder prediction 110 129 - -
Alju08g1522 436 FunFam E2F transcription factor 1 126 199 - -
Alju08g1522 436 Pfam E2F/DP family winged-helix DNA-binding domain 134 197 IPR003316 GO:0005667|GO:0006355
Alju08g1522 436 Gene3D - 128 199 IPR036388 -
Alju08g1522 436 Gene3D - 204 315 - -
Alju08g1522 436 Pfam E2F transcription factor CC-MB domain 213 312 IPR032198 GO:0046983
Alju08g1522 436 MobiDBLite consensus disorder prediction 94 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g1522 Alju-ChrAlju08 11895776 11899967 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g1522 12 403 E2F-DP Transcription Factor Family AT1G47870 45.301 1.63e-99 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Alju08g1522 E2F_CC-MB 4.9e-25 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju08g1522 08 11895776 11899967 Alju08g1522 08 11895776 11899967 ECH