Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g1512 ATGCCTGGGAACGTTGATTGCTTGGGTCATTGTACAACAGCCAAGGCCGGCATAGCTGGTTCATTGTACTCTGTTTCTATCTACATTTTTTCCTCTTTTGCACTTTGCAAAACGTTGTCAAACCAATGGACTTGGCTTGACAAGGTCGCATGCATCATCTTCATCTTTGAAGTTTCTTCTTCATTTGTCAAACCTTATAGTTTCATTCAAGATCGGTTAATCGACAAAGAAAGAAGGATCCAACACAAAGAACAGTGTGCAGAGAGGTTAGCAGCAGAAGATGAAAGCATCGATAAAGACAGTGAGGTCCAGTACTCTGATCAAGCAGTATTAGCAAATCTTGATTGGGGTATTGAAGCCCTTGAAGAAGCTATCAATACCTATAACATGGAAACTAAGATTGCTCGCTTAGATTATGCTGAGAAGATGTTACAAGTATGTGCCATGTTGAATCCTGATCGGAAAACCGCCGGAGTTCCAAATTTCTACCTCTCAGCTTGGGCCCACCTTAATCTCTCTTATCTATGGAAGTTGAAGAACAATGTTCAAAACTCAATTTTTCATGCTCTTGAGATGTTCATCGTTGACCCTTTTTTCTCAAGGATTGATTTTGCACCAGAGCTTTGGAAAGATCTATTTCTTCCACACATGAGTTCCATTGTTGGTTGGTATTCAGAGGAGAGGCATAGGCTCATGATGGAAGTTATACCTGACTCTTCAGATTTGTCTTTTACAGCTGATTTTGATCAGTTCTTCAATGAGTCTTTGATATATACTATGAGGCCACATCAAGCAGAGAAGCTGCAGAATCTGGAGAAGCTCTATGGAGAGTCATTGGACAAAAACACAATACTTTATGCAAAGTATTATAAGGATTGTATCAGCCCTGATTCAACAACCTCTAGCAAGAAGGCTCCGATGTTACCGATCGCCGAGCCACCGATGACTCCTCTGCATGAGTTGAGTTGCTCCATTCCTGATTATGTGAAATTTGGTCCTATATTGCCTAAAAGTGCTGGGTTTTCTCCTGTTCTAAAAGCTAAAGCTGGTGCAAATGAAACTATCAGAGGGAATGTCACTTCCAGCCATTCACAAAAGGCAGAGAAGTCATCATCTTCATGGAGTGCTAAGGAGAAAGCCATTGGAGAGTATGAAGATTCAGATGATGACCTTGATGATTCATACATTGATCGAGATAGAAAAACCCCAAATCTATTGAAGGGTGAGGATATTGAGCCAAAAGTACATCAATTGAACCAGAAGAATCAAATATATTCTCCTCCTGTTTTCTCTCCTTTAAATTCTCCAAGAGCAACTCCTAAAACTTCATCTTCACTTCATGCCATGCACACTAAAGGAGAACCCAAATCTCTGCGCTTATTGTCTAGGCGTTTTTCAGACACAAGTATTTCCAACTCTTCACCAATATCTCCACACATGAGTACTGATCACAGCATCAGTTCAGAAGATTCTGATAACGAAATAATGGGCGTGAAGAACAGTAAGAGGAAAAACCATTACTCAGAAAATATTATGAATCATGAGAAAGACAATATTCTCTCATTCAATGACAATTCTCTTTATGAGAGCCATGAGGGAAATAGCAGCTGTAGTTTATCACTAAAATCAGAGAAGACTACTGTTCAATCAAGACCTCCCAAAGATTTTGTTTGCCCTATCACAGGCCAGATATTTAGTGATCCAGTCACCCTTGAAACAGGTCAGACATATGAAAGAAAAGCAATTCAGGAGTGGCTCAAAACTGGAAATACAACATGTCCGATTACGCGGCAATCTATCTCGGCTAGCATACTACCTAAAACAAACTATGTCTTGAAGAGATTGATAACTTCATGGAAAGAACAACATCCAGAACTAGCTCAGGAGTTCTCAAATTCTTCTTCTGTCAAAGATATCCCAGTGGTCTCTAGAATGCACAAAAAAGCTGACTCACCAGCTCATAAGAGTGCAAATGATTATATTAGACAAAGGAGCAAAAGATTAATGCAGGTCTCTGTAGCATCATCACCAACAAGTGTGATATCTCAAGCTGAAGTTGAAACAATCATAAATTGTTTGAAACCTCGTATTTCAAGTCTCTGCACATCAGAAGACTTGCAAGAATGTGAGGATTCTGTGTTGGCGATCGCTGGATTATGGAAGGACTCAAAGAATGATCCTCATATTCATTCTTATTTATCAAATCCAACTGTTATAAATGGTTTAGTGGAAATACTTTCAGCTTCTCTAAATAGAGAAGTTCTGAGAACATCAATTTATATCCTGTCTGAGCTAATTTTTGCAGATGATAGAGTTGGAGAAATACTCTGCAATGTTGATTCTGATTTCGACTGCTTGGCTACTCTGCTTAAGAATGGTTTAATTGAGGCTGCTGTTCTAATTTACCAACTGAGGCCAGTTTACGATCAACTCTCTGCTCATGAACTAATACCCTCCATTGTCCAGCTGATCCAGAACAAAAATGAGGAGTTTGATGATCTTCGGTTCCTTATCGATCCCAAAGATGCAGCTGTGGCGATTCTTGAGCAGATTTTATTAGGTGGGAATGAATATAGCAGGTCCCTCAATGCTTTGAGTGTTATTTCAGCAAATGGAATTCCAATCTTGGTTAAGTATATGGAAAGGATGGAAGGAAGGAGGTCTGTTGTTTCCATTCTTCTGTGCTGTATGCAAGCTGACAGAAGTTGCAGGAGCTTAATTGCCAACAGAATTGAATTATCTCCTGTTCTTGAATTATTTCATTCTGGAAATGACAGTGTCAGAGGAATATGTGTGGAGTTTCTCTCTCAGCTTGTTCAATTGCATAGGAGGACACTGTGCAACAAGTTATTGCAAATTATCAAGGATGAGGGAGCATTTAGTACCATGCATACATTTCTTGTGTATCTTCAGATGGCTCCTATGGAGCATCAACTTGCAGTTGCTAGTCTTCTGCTTCAGCTTGATCTCCTGGTTGAGCCACGAAAGATGAGCATTTTCAGGGAAGAAGCTGTAGAGACCCTGATAGAATCACTTTGGCGAAAGGACTTCTCAAACACTCAGACGAAGGCTTTAGATGCTTTACTGCTTCTTATTGGGCATCTCACTTCTTCAGGAAAGTCATACACTGAAGCCTGGCTGCTTAAGATTGCAGGGTTTGACCAACCTTACAATTCTCTAATGAAAGTTGAGCAGTTGGAAAAACATGACAATGATCAGGTAGAATCAGTGGAGGATGAAGAAAATGCTATGAGTTCTTGGCAGAAAAGGGTGGCTTTTGTTCTTTGCAACCATGAAAAGGGTTCCATATTTAAAGCTCTAGAAGAATGTCTCAAGAGTACTTCCCTAGAGACAGCAAAATCATGTCTTGTCGTCGCCACGTGGCTCACACACATGCTCTCAACCATTCCTGATACAGGTATTAGGGATGTTGCTAGAACATCCTTGCTTGAGGAACTTATAAACGTCCTCCAATCATCCAAGAACCTCGAGGAAATGATCCTAGCTACCCTTGCTTTGAAGAACTTTATCAGTGATCCTATTGCTCTTGAAGCACTAGGAACTTATGCCAAAAGCATCTATAAAACACTGAGAAAGTTGAAGAAATATTCTGTGGTGGCTGCTGATATTATGAAAGCCTTACTGAACTTAAAATCCATTGATGTGACAGCATTGTGGAGTTGCAAGGAAGTCGTTGAGTTAGATTTGAGCTCAAATGGAGAGGTACTTTCTTTGCTTTATGTGAATGGCCGGGTCTTGAGTGGACACTCTGATGGAACCATGAAAGTGTGGGATGCCAATAACAGAGTATTAAGATTGGTTCAAGAAACTCGTGAACACAATAAAGGTGTAACATGTCTCTACTCTTCAGGCGATAAACTGTACAGTGGCTCCTTAGACAAAACCATCCGGGTATGGACGATGAAATGTAACGAGATTCACTGTGTTCAAGTTTATGATATCAAAGAGGCTGTGTATGAGTTGATAGCAAATGATAAATTGGCATGCTATGTAACTCAAGGAACTGGAGCTAAGGTGTATAATTGGTCGGAGCCTCCAAAGCTTATTAATTTCAACAAACATGTGAAGTGCCTCGCAATGTCTGCGAACAAACTATATTGTGGTTGCTCTGGTTACATTGTTCTGGAGGTAGACTTGTCAAATTATACATCAACCACAATTTTATCCGGGACAAGAAAATTGCTGGGAAAACAATTCATTCACTCCCTTCTAATTTATGATGATTTTCTTATCGCTGGTGGTTCTTTAGTTGATTCGACCGCAGGAAAGATATTGTCTTTGTCGTCAAAAGAAGTGGTGGGGTCACTCTCAACAGGCCTAGATATCCACCGTATGGCCATGAACAGTGACTTTGTATTTACCGGAACTAAATGTGGGACAATTGAGGTATGGCTAAAATATAAGCTAAGCAGGGTTGCTTCCATCAAAATGGCTGGTGGTCACACAAAAATCACGTCACTGGCTTCGGATTCAGATGGTGTGATGCTTTTTGTTGGTTCCTCTGACGGCAAGATCCAGGTTGGTTCATATTTGCTTGGGCTTTGGATTAGATGCTATCTGGGGACATAG 4590 0.4028 MPGNVDCLGHCTTAKAGIAGSLYSVSIYIFSSFALCKTLSNQWTWLDKVACIIFIFEVSSSFVKPYSFIQDRLIDKERRIQHKEQCAERLAAEDESIDKDSEVQYSDQAVLANLDWGIEALEEAINTYNMETKIARLDYAEKMLQVCAMLNPDRKTAGVPNFYLSAWAHLNLSYLWKLKNNVQNSIFHALEMFIVDPFFSRIDFAPELWKDLFLPHMSSIVGWYSEERHRLMMEVIPDSSDLSFTADFDQFFNESLIYTMRPHQAEKLQNLEKLYGESLDKNTILYAKYYKDCISPDSTTSSKKAPMLPIAEPPMTPLHELSCSIPDYVKFGPILPKSAGFSPVLKAKAGANETIRGNVTSSHSQKAEKSSSSWSAKEKAIGEYEDSDDDLDDSYIDRDRKTPNLLKGEDIEPKVHQLNQKNQIYSPPVFSPLNSPRATPKTSSSLHAMHTKGEPKSLRLLSRRFSDTSISNSSPISPHMSTDHSISSEDSDNEIMGVKNSKRKNHYSENIMNHEKDNILSFNDNSLYESHEGNSSCSLSLKSEKTTVQSRPPKDFVCPITGQIFSDPVTLETGQTYERKAIQEWLKTGNTTCPITRQSISASILPKTNYVLKRLITSWKEQHPELAQEFSNSSSVKDIPVVSRMHKKADSPAHKSANDYIRQRSKRLMQVSVASSPTSVISQAEVETIINCLKPRISSLCTSEDLQECEDSVLAIAGLWKDSKNDPHIHSYLSNPTVINGLVEILSASLNREVLRTSIYILSELIFADDRVGEILCNVDSDFDCLATLLKNGLIEAAVLIYQLRPVYDQLSAHELIPSIVQLIQNKNEEFDDLRFLIDPKDAAVAILEQILLGGNEYSRSLNALSVISANGIPILVKYMERMEGRRSVVSILLCCMQADRSCRSLIANRIELSPVLELFHSGNDSVRGICVEFLSQLVQLHRRTLCNKLLQIIKDEGAFSTMHTFLVYLQMAPMEHQLAVASLLLQLDLLVEPRKMSIFREEAVETLIESLWRKDFSNTQTKALDALLLLIGHLTSSGKSYTEAWLLKIAGFDQPYNSLMKVEQLEKHDNDQVESVEDEENAMSSWQKRVAFVLCNHEKGSIFKALEECLKSTSLETAKSCLVVATWLTHMLSTIPDTGIRDVARTSLLEELINVLQSSKNLEEMILATLALKNFISDPIALEALGTYAKSIYKTLRKLKKYSVVAADIMKALLNLKSIDVTALWSCKEVVELDLSSNGEVLSLLYVNGRVLSGHSDGTMKVWDANNRVLRLVQETREHNKGVTCLYSSGDKLYSGSLDKTIRVWTMKCNEIHCVQVYDIKEAVYELIANDKLACYVTQGTGAKVYNWSEPPKLINFNKHVKCLAMSANKLYCGCSGYIVLEVDLSNYTSTTILSGTRKLLGKQFIHSLLIYDDFLIAGGSLVDSTAGKILSLSSKEVVGSLSTGLDIHRMAMNSDFVFTGTKCGTIEVWLKYKLSRVASIKMAGGHTKITSLASDSDGVMLFVGSSDGKIQVGSYLLGLWIRCYLGT 1529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g1512 1529 Gene3D - 1221 1515 IPR015943 GO:0005515
Alju08g1512 1529 MobiDBLite consensus disorder prediction 468 492 - -
Alju08g1512 1529 CDD RING-Ubox_PUB 553 605 IPR045210 -
Alju08g1512 1529 MobiDBLite consensus disorder prediction 425 450 - -
Alju08g1512 1529 MobiDBLite consensus disorder prediction 468 484 - -
Alju08g1512 1529 Pfam WD domain, G-beta repeat 1486 1513 IPR001680 GO:0005515
Alju08g1512 1529 Pfam WD domain, G-beta repeat 1274 1306 IPR001680 GO:0005515
Alju08g1512 1529 SUPERFAMILY RING/U-box 542 624 - -
Alju08g1512 1529 MobiDBLite consensus disorder prediction 356 377 - -
Alju08g1512 1529 SUPERFAMILY WD40 repeat-like 1237 1514 IPR036322 GO:0005515
Alju08g1512 1529 Gene3D - 694 969 IPR011989 -
Alju08g1512 1529 MobiDBLite consensus disorder prediction 425 451 - -
Alju08g1512 1529 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 535 636 IPR013083 -
Alju08g1512 1529 MobiDBLite consensus disorder prediction 356 401 - -
Alju08g1512 1529 ProSiteProfiles Trp-Asp (WD) repeats profile. 1277 1309 IPR001680 GO:0005515
Alju08g1512 1529 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 67 1514 - -
Alju08g1512 1529 SUPERFAMILY ARM repeat 656 1217 IPR016024 -
Alju08g1512 1529 SMART WD40_4 1270 1307 IPR001680 GO:0005515
Alju08g1512 1529 SMART WD40_4 1227 1265 IPR001680 GO:0005515
Alju08g1512 1529 SMART WD40_4 1436 1472 IPR001680 GO:0005515
Alju08g1512 1529 SMART WD40_4 1475 1516 IPR001680 GO:0005515
Alju08g1512 1529 SMART Ubox_2 555 619 IPR003613 GO:0004842|GO:0016567
Alju08g1512 1529 ProSiteProfiles U-box domain profile. 551 626 IPR003613 GO:0004842|GO:0016567
Alju08g1512 1529 Pfam U-box domain 553 623 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g1512 Alju-ChrAlju08 11822625 11829925 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g1512 534 938 U-box Gene Family AT1G23030 26.139 3.67e-20 94.7