Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g1491 ATGACAATACATGTAAATACAAGCTCAAACTTTCCTCCTCATCAAGGTTCCACCATTAAGCAAAGCAAGAAAATGGAGAAAGCAATGGTTGTTCTGGGCAGCCTTGTGGGATTATGGTATGTCACAGTGACTGCTTCAGCCTTCACAGCTTCTGGTTGGACCCAAGGACATGCCACCTTCTATGGAGGTAGCGATGCCTCAGGAACAATGGGAGGAGCTTGTGGGTATGGGAATCTGTACTTAGCAGGGTATGGAACAAGAACTGCAGCTTTAAGCACAGCCTTATTCAACGATGGAGCTTCATGTGGACAATGCTACAAAATCATATGTGATTACAAGACAGACCCAAGATGGTGCATTAAAGGAAGATCTATAACTATAACTGCCACTAATTTCTGTCCTCCCAATTTTGCTCTTCCGAACAACAATGGAGGTTGGTGCAACCCACCTCTGAAGCACTTTGACATGGCTCAACCAGCTTGGGAAAAGATCGGTATTTACAGAGGAGGCATCATCCCAGTCTTGTTCCAAAGGGTTCCATGTAAGAAGCATGGAGGTGTTAGGTTCACTGTGAATGGAAGAGACTACTTTGAGCTGGTAATGATCAGTAATGTGGCAGGGGCTGGATCCATAGCTTCTGTGTCCATCAAAGGCTCAAAGACTGGTTGGATGGCTATGTCCAGAAACTGGGGAGCTAATTGGCAATCCAATGCGTATTTGAATGGTCAATCTCTGTCCTTCAAGATCACCACTGATGATGGAGTAACCAGAATTTTCCCAGATGTGGTTCCATCTTCTTGGAGTTTTGGCCAGACATTCTCTAGCAAAATCCAGTTCTAA 840 0.4476 MTIHVNTSSNFPPHQGSTIKQSKKMEKAMVVLGSLVGLWYVTVTASAFTASGWTQGHATFYGGSDASGTMGGACGYGNLYLAGYGTRTAALSTALFNDGASCGQCYKIICDYKTDPRWCIKGRSITITATNFCPPNFALPNNNGGWCNPPLKHFDMAQPAWEKIGIYRGGIIPVLFQRVPCKKHGGVRFTVNGRDYFELVMISNVAGAGSIASVSIKGSKTGWMAMSRNWGANWQSNAYLNGQSLSFKITTDDGVTRIFPDVVPSSWSFGQTFSSKIQF 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g1491 279 Pfam Expansin C-terminal domain 187 264 IPR007117 -
Alju08g1491 279 FunFam Expansin 42 182 - -
Alju08g1491 279 MobiDBLite consensus disorder prediction 1 20 - -
Alju08g1491 279 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 71 186 IPR007112 -
Alju08g1491 279 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 196 275 IPR007117 -
Alju08g1491 279 SUPERFAMILY PHL pollen allergen 183 275 IPR036749 -
Alju08g1491 279 PRINTS Expansin signature 83 97 IPR002963 GO:0009664
Alju08g1491 279 PRINTS Expansin signature 197 218 IPR002963 GO:0009664
Alju08g1491 279 PRINTS Expansin signature 144 161 IPR002963 GO:0009664
Alju08g1491 279 PRINTS Expansin signature 161 174 IPR002963 GO:0009664
Alju08g1491 279 PRINTS Expansin signature 185 197 IPR002963 GO:0009664
Alju08g1491 279 PRINTS Expansin signature 232 253 IPR002963 GO:0009664
Alju08g1491 279 PRINTS Expansin signature 112 123 IPR002963 GO:0009664
Alju08g1491 279 PRINTS Expansin signature 125 135 IPR002963 GO:0009664
Alju08g1491 279 PRINTS Expansin signature 261 277 IPR002963 GO:0009664
Alju08g1491 279 Gene3D - 186 279 IPR036749 -
Alju08g1491 279 MobiDBLite consensus disorder prediction 1 19 - -
Alju08g1491 279 CDD DPBB_EXPA_N 52 181 - -
Alju08g1491 279 PANTHER EXPANSIN-A15 35 276 IPR002963 GO:0009664
Alju08g1491 279 Gene3D - 40 182 IPR036908 -
Alju08g1491 279 SUPERFAMILY Barwin-like endoglucanases 45 204 IPR036908 -
Alju08g1491 279 Pfam Lytic transglycolase 88 175 IPR009009 -
Alju08g1491 279 SMART dpbb_1 88 176 IPR007112 -
Alju08g1491 279 PRINTS Expansin/Lol pI family signature 169 185 IPR007118 GO:0005576
Alju08g1491 279 PRINTS Expansin/Lol pI family signature 223 237 IPR007118 GO:0005576
Alju08g1491 279 PRINTS Expansin/Lol pI family signature 52 67 IPR007118 GO:0005576
Alju08g1491 279 PRINTS Expansin/Lol pI family signature 70 88 IPR007118 GO:0005576
Alju08g1491 279 PRINTS Expansin/Lol pI family signature 92 110 IPR007118 GO:0005576
Alju08g1491 279 PRINTS Expansin/Lol pI family signature 261 275 IPR007118 GO:0005576
Alju08g1491 279 FunFam Expansin 186 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g1491 Alju-ChrAlju08 11599407 11600427 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g1491 88 279 Expansin Gene Family AT1G20190 81.771 3.94e-121 342
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju08g1491 08 11599407 11600427 Alju08g1491 08 11599407 11600427 ECH