Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g1490 ATGCTGACTTCTGACTCGATCTGGACTTGGAAATATAAGTGGTGGGAGACGATTTGTAGAGAATTTTTCATAATGACTCAAGATATTGAGATGAAAGATCGCACAACTTCTTCGCATTCTGTTTCTTCAGCTGTTCCATCTGCTTTGCAGCATTTAAAGGAGATAGCATCACTTATTGAGACCGGTTCGTACTCTAAGGAAGTTCGTAGAATTGCTCGTGCCGTTCGCCTTACAACTTTGTTGAGGCGCAAATTGACAGCATCGGTGCTTTTATCTTTTATCGATTATGTTACTTGTTCGGGTTCTGAGCCTCACGCCAGATTGTCTGCCTATCTTCCCGAGGAAGATCGTCATCAGATGGAAGTAGATACTGCAACATCTACTGTTCAATCCTCAGCCAAGCACTTATTGCCTGAGATGGAGATGTACTGTTACTTGCTCATTGTACTTTTTCTGATTGATCAGAAGAGATATAAGGAGGCCAAAGCTTGTTCCTCAGAAAGCGTTGCCCGAGTGAAGAAACTTAACGGAAGAACTGTTGATGTTATTGCAGCCAGACTGTACTTCTATTATTCATATATTCATGAACTCACAGGAGATCTTGCAGAAATTCGGGGTAACCTTCTTGCATTGCACCAGATTGCTACCCTTCACCATGATGAGCTTGGTCAGGAAACACTTCTTAATTTGTTGCTTCGCAACTACCTCCACTACAACCTATTTGATCAGGCAGAGAAGTTGAGATCTAAGGCGCAACGATTTGAAGCACATTCAAACCAGCAGTTCTGTCGATATCTCTTCTACCTTGGGAAAATTCGAACAATTCAGTTGGAGTACACTGATGCAAAAGAGTCTCTCCTGCAAGCTGCTCGCAAGGCTCCAGTTGCGGCACTTGGGTTTCGAATTCAGTGTAATAAGTGGGCTGTAATAGTGCGTTTGCTGTTGGGAGAAATACCTGAGAGGACTATCTTCACGCAGAAAGGAATGGAGAAAGCTTTGAGGCCTTACTTTGAGCTTACAAATGCAGTTCGAATTGGGGACCTGGAGCTATTTAGGAATGTTGCTGATAAATTTGCTACTACTTTTAGGGCTGATGGAATTCGTAATTTGATTGTTAGGTTGCGTCATAACGTCATCAGGACTGGTTTACGAAACATTAGCATTTCTTATTCTCGTATCTCACTTGCTGATGTGGCACAAAGATTAAGGTTAAACTCTGCAAACCTTATTGCTGATGCTGAGAGCATTGTGGCCAAGGCCATCAGAGATGGTGCAATTGATGCTACATTGGACCATGGTAATGGGTGGATGGTATCTAAGGAAACTGGAGATGTATACTCCACTACTGAACCTCAACTTTCTTTTAATTCTCGAATTGCCTTCTGTCTTGACCTGCACAATGCGGCCATCCGAGCACTGCGTTTCCCACCAAACACACACAATGAGAAAGAAAGCGCTGAGAAGCGGAGAGAAAGGCAGCAGCAGGAGCAAGAACTAGCTAAGCACATTCAAGAGGAGGAGGATGATGATTTCTGA 1536 0.4323 MLTSDSIWTWKYKWWETICREFFIMTQDIEMKDRTTSSHSVSSAVPSALQHLKEIASLIETGSYSKEVRRIARAVRLTTLLRRKLTASVLLSFIDYVTCSGSEPHARLSAYLPEEDRHQMEVDTATSTVQSSAKHLLPEMEMYCYLLIVLFLIDQKRYKEAKACSSESVARVKKLNGRTVDVIAARLYFYYSYIHELTGDLAEIRGNLLALHQIATLHHDELGQETLLNLLLRNYLHYNLFDQAEKLRSKAQRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAALGFRIQCNKWAVIVRLLLGEIPERTIFTQKGMEKALRPYFELTNAVRIGDLELFRNVADKFATTFRADGIRNLIVRLRHNVIRTGLRNISISYSRISLADVAQRLRLNSANLIADAESIVAKAIRDGAIDATLDHGNGWMVSKETGDVYSTTEPQLSFNSRIAFCLDLHNAAIRALRFPPNTHNEKESAEKRRERQQQEQELAKHIQEEEDDDF 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g1490 511 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3 36 502 - -
Alju08g1490 511 MobiDBLite consensus disorder prediction 475 511 - -
Alju08g1490 511 ProSiteProfiles PCI domain profile. 263 444 IPR000717 -
Alju08g1490 511 SUPERFAMILY "Winged helix" DNA-binding domain 369 447 IPR036390 -
Alju08g1490 511 Gene3D - 242 466 - -
Alju08g1490 511 Coils Coil 478 505 - -
Alju08g1490 511 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 369 462 IPR000717 -
Alju08g1490 511 Pfam Proteasome regulatory subunit C-terminal 444 510 IPR013586 GO:0000502|GO:0030234|GO:0042176
Alju08g1490 511 FunFam 26S proteasome non-ATPase regulatory subunit 3 144 467 - -
Alju08g1490 511 Pfam PCI domain 335 440 IPR000717 -
Alju08g1490 511 SMART PCI/PINT associated module 198 369 - -
Alju08g1490 511 MobiDBLite consensus disorder prediction 477 504 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g1490 Alju-ChrAlju08 11591912 11596428 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju07g2956 07 54571390 54574669 Alju08g1490 08 11591912 11596428 CCT
Alju08g1490 08 11591912 11596428 Alju08g1490 08 11591912 11596428 ECH