Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g1486 ATGATCGACTCCGTTCTTCTGGCACTCTTCTTGCCCTGCCTCGGCATGAGCGCCATCTTCGTAGTCTACATGTGTCTTCTCTGGTACGCCACTACCCATCGCCCTCAAATCGCGCTGCCGTCGAAGCCCGCGCCGGAGAAGGGCCTGTCGGCATCGGAGCTGGAGAAGATGCCCAAAGTCACCGGGAAGGAACTGGTGATGGGGAGTGAATGCGCTGTTTGTCTCGACGAGATCGAAAACGAACAACCGGTTCGACTGGTTCCCGGCTGCAACCACGGGTTCCATGTGGAATGCGCTGATACCTGGCTTTCCAAGCACCCTCTGTGCCCGGTCTGTAGAGCCAAGCTGGATCCTCAGATTCTCAAGCCCTGTGAAAATCCCTGTTAA 387 0.5685 MIDSVLLALFLPCLGMSAIFVVYMCLLWYATTHRPQIALPSKPAPEKGLSASELEKMPKVTGKELVMGSECAVCLDEIENEQPVRLVPGCNHGFHVECADTWLSKHPLCPVCRAKLDPQILKPCENPC 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g1486 128 ProSiteProfiles Zinc finger RING-type profile. 71 113 IPR001841 -
Alju08g1486 128 Pfam Ring finger domain 70 113 IPR001841 -
Alju08g1486 128 SMART ring_2 71 112 IPR001841 -
Alju08g1486 128 SUPERFAMILY RING/U-box 55 119 - -
Alju08g1486 128 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 38 119 IPR013083 -
Alju08g1486 128 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 5 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g1486 Alju-ChrAlju08 11578159 11578545 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g1486 1 128 C3H Transcription Factor Family AT5G42200 55.147 3.48e-46 145
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju08g1486 08 11578159 11578545 Alju08g1486 08 11578159 11578545 ECH