Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g1456 ATGTTGGAGCAGTATTATGGTCCAATCGTTGAATGTGCCGCATATTTGTCGTTATTATTCGATAGAGTTGACTTGTGCATCAGAGAAAAAGACACTGGTGAGAGCGTCCCTGTTGGAGAAGTGGCGAACAGCAAAGGTAACACCGGGGCCACTACTGGAAACAGTGGACCTCCCAACTTCTGTTGTCCGCAACCCGTTTCTCTCTCCTGTGGGAATCCTAGCCTCCCAATTCACCATCCTGTTTTCGACATGAAAGGTGGCAAATCGAAGGCTGAATCTAAGAAAGCTGATGCCAAGCTTGCTGTGAATAAGAAGGGCGCCGCCGCCACCAAGGCGGGCAGGAAAGCAAGCAAGGGCAAGGCGGCAAAAGACCCTAACAAACCAAAGAGACCGGCCAGTGCCTTCTTTGTTTTCATGGAGGAGTTTAGGAAGCAGTTTAACAAGGAGAATCCTGACAACAAAGCAGTGTCTGCTGTTGGCAAAGCTGCTGGGGCAAAATGGAAGTCCATGTCTGATGCTGATAAAGCACCCTATGTAGCCAAAGCAGAGAAACGAAAGGCTGACTATGAGAAGAATATGAAAGCGTATAACAAGAGACAGGCGGAAGGTACAAATGCTGCAGATGAAGAAGAATCTGACAAATCAGTTTCTGAGGTGAATGATGAAGATGAAGGAGATGAAGAGGGCAGTGATGAGGAGGAAGACGACGAGTAG 714 0.479 MLEQYYGPIVECAAYLSLLFDRVDLCIREKDTGESVPVGEVANSKGNTGATTGNSGPPNFCCPQPVSLSCGNPSLPIHHPVFDMKGGKSKAESKKADAKLAVNKKGAAATKAGRKASKGKAAKDPNKPKRPASAFFVFMEEFRKQFNKENPDNKAVSAVGKAAGAKWKSMSDADKAPYVAKAEKRKADYEKNMKAYNKRQAEGTNAADEEESDKSVSEVNDEDEGDEEGSDEEEDDE 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g1456 237 CDD HMG-box_AtHMGB1-like 129 189 - -
Alju08g1456 237 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 84 232 IPR031061 -
Alju08g1456 237 Gene3D High mobility group box domain 111 213 IPR036910 -
Alju08g1456 237 Pfam HMG (high mobility group) box 128 197 IPR009071 -
Alju08g1456 237 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 128 197 IPR009071 -
Alju08g1456 237 MobiDBLite consensus disorder prediction 214 237 - -
Alju08g1456 237 MobiDBLite consensus disorder prediction 177 213 - -
Alju08g1456 237 SUPERFAMILY HMG-box 115 202 IPR036910 -
Alju08g1456 237 MobiDBLite consensus disorder prediction 104 130 - -
Alju08g1456 237 MobiDBLite consensus disorder prediction 162 237 - -
Alju08g1456 237 Coils Coil 179 199 - -
Alju08g1456 237 SMART hmgende2 127 198 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g1456 Alju-ChrAlju08 11316494 11322550 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Alju08g1456 HMG_box 2.3e-23 CL0114