Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g1440 ATGGCATACCACCAGATCCAGGGTCATACGCCCACGCCTGGATCCAATTCAAGTTCTGGATTTCAATCAATAAACTCCCCTTTTGGTGATACCACTTTTACCAAGGTATTTGTTGGAGGATTGGCGTGGGAGACCCAGAGCGAAACCATGCGCCGATATTTTGAGCAGTTTGGCGACATTCTTGAAGCTGTTGTAATCACTGATAGGAATACAGGCCGATCCAAAGGCTATGGTTTTGTGACTTTCCGGGATCCTGAGGCTGCTAGAAGAGCCTGTGCTGATCCAACTCCTGTCATTGATGGAAGGAGGGCCAATTGTAACTTGGCTTCACTTGGACGACCGTGGCCTCCTCTTCCATATGGACGGGTGAGACCAGCTCCTGCTTACATTGGAAATGTGCAACAAGCCAGAGGTGCCTATGTTGGAGGTTTTGGCTATCAGCAACCACCTTCTTACAGCTATCAACAAGGATTGGTTTATCCTCATTATGGGTATACGGCATATGGACCTGAATATGTATATCCACAGGGTTTGTACAACCCATATATGGGCCAGCAGTATGTTCAGATATATGGAGTGCCTGGTGCAGTGAATAATACCATTTATCCTTATGGGCAATTAGGTCAGGCTATTCCCAGTAGTCATGGTTATGCAGGGATGCAGGGCTATGCTGTAGCTGGCCACCACATTGTACCTTATGGTGGAACCAATGTTAATGCCCTGACTACTTCACCTATGCCTACCATTCAAGTACCATATCCCAGTGGAATTGCTGCACCAATTCCAGGACAACCCCAATTTATTGTATCCTTAGTTTGCAGCAGGACTAAGAGCAGTGGATCTGCTACTTGTGTGGCGGGCTTCCAATCTAGCCTTGCAAGTTATATATATTGCATTCTAGAGGTTATATTTAGTCATGCTCACCATCAAGTTGGGTCGGAGGTGCTCCAGATGGCAGAGAAGGAAACTGGAAGATGCAGGCTGCATTTCCATTTGAACATTTATATAATGTATTTATACCCATGCTATTAG 1032 0.4583 MAYHQIQGHTPTPGSNSSSGFQSINSPFGDTTFTKVFVGGLAWETQSETMRRYFEQFGDILEAVVITDRNTGRSKGYGFVTFRDPEAARRACADPTPVIDGRRANCNLASLGRPWPPLPYGRVRPAPAYIGNVQQARGAYVGGFGYQQPPSYSYQQGLVYPHYGYTAYGPEYVYPQGLYNPYMGQQYVQIYGVPGAVNNTIYPYGQLGQAIPSSHGYAGMQGYAVAGHHIVPYGGTNVNALTTSPMPTIQVPYPSGIAAPIPGQPQFIVSLVCSRTKSSGSATCVAGFQSSLASYIYCILEVIFSHAHHQVGSEVLQMAEKETGRCRLHFHLNIYIMYLYPCY 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g1440 343 Gene3D - 3 116 IPR012677 -
Alju08g1440 343 SMART rrm1_1 35 107 IPR000504 GO:0003723
Alju08g1440 343 SUPERFAMILY RNA-binding domain, RBD 11 121 IPR035979 GO:0003676
Alju08g1440 343 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 34 111 IPR000504 GO:0003723
Alju08g1440 343 PANTHER BOULE-RELATED 15 248 - -
Alju08g1440 343 MobiDBLite consensus disorder prediction 1 23 - -
Alju08g1440 343 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 28 114 - -
Alju08g1440 343 CDD RRM_RBM24_RBM38_like 34 109 - -
Alju08g1440 343 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 36 92 IPR000504 GO:0003723
Alju08g1440 343 MobiDBLite consensus disorder prediction 8 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g1440 Alju-ChrAlju08 11170369 11174015 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g1440 24 216 C2H2 Transcription Factor Family AT2G19380 27.451 2.17e-15 75.5