Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g1413 ATGAGGGAGTGGGTGATGGAGAGCAGTACTCCCAGAGAAGCCGAGATCAAGAACAGAAAACTTGAGATTAGAGAAGATCAGAACTCAGAAGAGCTAGGTCATCGGCTTCGGCTCATCGCGTCGGACAATTTTGCCCCCAGCACATATCCACCTGTCACCAATGGCGAACAGCTTATGCATTTCTCACTCGTGAAAGGGCAGTTATGCCCCGGCAATACCTCTTCTTTTGAATCTCTCGTGGAGCGCGCCAAGTCTGAACGACTGGACCCCAATCCTCAAAGAGAAGCTTTAACCATGTCACTCTCTCTCCTTGAAGCGTGTAAGAAGAGAAAGAGATTGCCCAAGGTTTTCAGGTTTCACTCTTTCGCCGACCCTGGTTGTCCAATCAGTCCTAATGGACCTTTTAGAGATAACATTCGTCTCTTTCTTCAAGAATGTGGTGAGCTCGAAGATTTTCAGATCCAGGGCATGCCTCTATGGACCACCGTTCTTATTCACGAGAAATCAAACTGTATGACCCCTCTTTACACCATCGAAGAGAATGTTTACAACTCTTCGCACCCCTCCTGCGATCATTGCCGATGTGCAGGCTGGAGCGGCCATTTTGTATCGAAGAGAAGGTACCATTTCATAATCGCCGCCGATAATAAACCGTTGACTGAAGGTTTTCTTGATGATCAGAGTCATCTCTTGCACGGAATGATTCACAGTAACGGGTACGGCCATTTGCTCTGTATTAATGGCATTGAAGGGGGTTCTAAATTTCTCAGTGGCAGAGAAATCATGGATCTGTGGGACAGGATCTGTACAATTCTTCGAACAAGGAAAATCGCAGTTGAAGATACATCAAAGAAGCGTTCAATGGATCTTCGCCTACTTCATGGAGTTGCTTATGGCCATTCTTGGTTTGGTAGGTGGGGTTACAGATTTTGTCGTGGAAGCTTCGGTGTCACAGAGCACAATTATAATGCAGCAATCGAACTTCTAAGTTCATTAGAGCTTGATGAGGTCGTTCAATGTTTTGGTAATACAATGTGCCATAAGGAAATCAAACAAATAATTCGCCATTATAGAGACATGAGTGAAACCCAGTTGATTACAATCAAGGATCTCCTCAGGTTTATGCTTACTGTCAAGTCTCGAACACCTCCTCCACCCAAGAGAGTAATAGTCAGTCTCAGTGGTCCTCCTTCTTCAACCTTCTGTTCAAAACACCCAACGAGATTTGCAATGTCAAGGAAACGAATCCCGTTAAAGGAGAAATCAGTCAGGTACAAAAAGTTCAGTTCTGCAGTGGCTAATATGGATAGTAGGTGGCCTTCAAGGCGACTAGAATACGCAGCCCAAGTGATAGTAGATGCTCTGAAAGAAAACAAAGCAAATAGTTCAGGTTCTGGTGGGATGACTAGGCAAGATGTGAGAGATGCAGCTAGGCTCCACATTGGTGACACAGGCTTGCTGGATTATGTGCTGAAATCAATGAATAATATGATTGTTGGAAACTATGTTGTTCGTCGAATGGTCAACCCGACAACTAGAATCCTAGAGTATAACATTCATGAGCATGGAAATGGGTCTAAATCCCCTCAACCACATCCTGGGGTAAAGGTTTTTAATTCTATAGAGCCTCCACCAGCAGAGTCAGAACAAGTGCCAGGAATTGATGTTTACAGTGATGTAGCTTATCTGTACAAGAATGTCCTATTGTGCTTCCCAGATTCAGAACAAGGAGACTTGGCAGTTCAAACGATTCTAGACAGCAGGCATTTTGTGAAGGAATGGTTATTAATCGATGAAATAGAGCATGTTTTGACATTCATATGCCACTTGATGCCCAACTCTGTTGATGAAAAACCAGAGTTCATGAACAGGGAAGTGTCCCCAGGTGAGATAGTGACAGTTCCACTGCATGCAACAGTTGGAGACTTGAAGCAAGCAGCTGAGACTGCTCTGAGGGATACTTATTGTATTGCAGATGGACTCATGGTGCTAGAGATAGCAGAGTTGGCGGGAATAAGTGATGAGGAGGTGCTTTTTGGAGTAGTAGAATCTGGTGTGGATCTGCGTATTAGGGGAATTGGTTCAAATATGCTTACTCCATTGAATTATCAGGGAGGATCAGACACTTGGAGGGTGAGATGTGAATGTGGAGCTCAAGATGATGATGGTGAGAGAATGGTGGCTTGTGACGTGTGTGAGGTGTGGCAGCACACACGGTGCTGTGGGATCGATGACTCTGAGACTGTGCCACCATTGTTTGTGTGCTCTAGCTGCTGTGATTCACTTGTACCTCCAAGGTTTGATTCTACATTTTGCAACGATAATGGCATGGACTGTGTCTGTGCAGATGACTTTCTGATCTCCCCAGAGCCTAATAACCTTCTGGGATATGGGTATGGGTACTGA 2406 0.448 MREWVMESSTPREAEIKNRKLEIREDQNSEELGHRLRLIASDNFAPSTYPPVTNGEQLMHFSLVKGQLCPGNTSSFESLVERAKSERLDPNPQREALTMSLSLLEACKKRKRLPKVFRFHSFADPGCPISPNGPFRDNIRLFLQECGELEDFQIQGMPLWTTVLIHEKSNCMTPLYTIEENVYNSSHPSCDHCRCAGWSGHFVSKRRYHFIIAADNKPLTEGFLDDQSHLLHGMIHSNGYGHLLCINGIEGGSKFLSGREIMDLWDRICTILRTRKIAVEDTSKKRSMDLRLLHGVAYGHSWFGRWGYRFCRGSFGVTEHNYNAAIELLSSLELDEVVQCFGNTMCHKEIKQIIRHYRDMSETQLITIKDLLRFMLTVKSRTPPPPKRVIVSLSGPPSSTFCSKHPTRFAMSRKRIPLKEKSVRYKKFSSAVANMDSRWPSRRLEYAAQVIVDALKENKANSSGSGGMTRQDVRDAARLHIGDTGLLDYVLKSMNNMIVGNYVVRRMVNPTTRILEYNIHEHGNGSKSPQPHPGVKVFNSIEPPPAESEQVPGIDVYSDVAYLYKNVLLCFPDSEQGDLAVQTILDSRHFVKEWLLIDEIEHVLTFICHLMPNSVDEKPEFMNREVSPGEIVTVPLHATVGDLKQAAETALRDTYCIADGLMVLEIAELAGISDEEVLFGVVESGVDLRIRGIGSNMLTPLNYQGGSDTWRVRCECGAQDDDGERMVACDVCEVWQHTRCCGIDDSETVPPLFVCSSCCDSLVPPRFDSTFCNDNGMDCVCADDFLISPEPNNLLGYGYGY 801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g1413 801 SUPERFAMILY FYVE/PHD zinc finger 699 763 IPR011011 -
Alju08g1413 801 ProSitePatterns Zinc finger PHD-type signature. 714 758 IPR019786 -
Alju08g1413 801 Pfam PHD-finger 713 759 IPR019787 -
Alju08g1413 801 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 107 765 - -
Alju08g1413 801 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 701 762 IPR013083 -
Alju08g1413 801 CDD PHD_MMD1_like 714 758 - -
Alju08g1413 801 SMART PHD_3 713 759 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g1413 Alju-ChrAlju08 10943394 10947338 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g1413 108 767 PHD Transcription Factor Family AT5G22260 33.891 3.10e-116 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Alju08g1413 PHD 7.5e-07 CL0390