Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g1411 ATGACTAGAAAGAAGGTGAAGCTGGCGTTCATAGCGAACGACTCTGCTAGAAAAGCCACATACAAGAAAAGAAAGAAGGGTCTGATCAAGAAGATAGACGAACTCACCACTCTCTGTGGAATCGAGGCCTGTGCAATCCTCTACAGTCCGTACGACTCTCAGCCGGAGGTTTGGCCGTCGCCGTTCGAGGCCCAGCGCGTGTTGTTGAAGTTCCGGAGGATGCCGGAGCTGGAACAGAGCAAGAAGATGGTGAACCAGGAAGGGTTTCTGAAACAGAGGATTCTGAAAGCGAAGGAGCAGTTGAAAAAACAGAGGAAGGACAACAGAGAGAAGGAGATGACTCAGGTGATGTATCAGTATCTCAGTGCAGGGAAGGTTCTTCATAACATGACGATGATCGATCTCAACGATCTGGCTTGGCTCGTCGAGCAGAATCTGAAGGACGTTAACCGGAGGATCGAGGCGTTGGATAAGAGGGCTCAGAATCAGAGGGCGGCCGACGTGGCGGCAATGGCGGCGGCTGACGTGGCGTCGAGGGGCCGAGATAAGGCGAAGGCGGAGCAGGCAGATGGGATGGAGGTGGCCGGCGGCGGGGACGGGATGGCGAAGCAGCAGTGGTATATGGAGATGATGAATGGTGGTGCTGATGAAACGATGTCGTTTGGAGATGTGAGTCATTCCAATGCGTTTTGGCATAATAACTATTTCCCTTGA 714 0.528 MTRKKVKLAFIANDSARKATYKKRKKGLIKKIDELTTLCGIEACAILYSPYDSQPEVWPSPFEAQRVLLKFRRMPELEQSKKMVNQEGFLKQRILKAKEQLKKQRKDNREKEMTQVMYQYLSAGKVLHNMTMIDLNDLAWLVEQNLKDVNRRIEALDKRAQNQRAADVAAMAAADVASRGRDKAKAEQADGMEVAGGGDGMAKQQWYMEMMNGGADETMSFGDVSHSNAFWHNNYFP 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g1411 237 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Alju08g1411 237 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Alju08g1411 237 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Alju08g1411 237 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Alju08g1411 237 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Alju08g1411 237 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Alju08g1411 237 Coils Coil 91 114 - -
Alju08g1411 237 Coils Coil 146 166 - -
Alju08g1411 237 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Alju08g1411 237 PANTHER MADS BOX PROTEIN 3 148 - -
Alju08g1411 237 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Alju08g1411 237 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Alju08g1411 237 Gene3D - 13 96 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g1411 Alju-ChrAlju08 10933410 10934123 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g1411 1 175 Type I MADS-box Gene Family AT5G48670 60.571 5.47e-67 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Alju08g1411 SRF-TF 2.8e-16 No_clan