Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g1410 ATGGTTTTATCTTGGTCCAGAAGAAGAGTTTTCTGCCGTGCCCGCAAAGGAAAAGACCTTCCCGGTGGCGCCGTCAACGCCGACGACGGAGACTTGGACGTCGTGGATGTCGACGTCGTCGTTCCGACCCACTTCCGGTGCCCGATCACTCTGGACTTGATGTCAGATCCGGTGACTTTATCCACCGGAATCACCTACGACCGGGATAGCATCGAGAAGTGGATAGAATCTGGAAACAGAACGTGCCCAGTCACCAATCAGCCTTTGACTACCTTCGACATGATCCCCAACCACGCCATTCGAAGAATGATCCAAGAATGGTGTGTCGAACATCGTTCCTTCGGCTTCGAGAGAATCCCCACCCCGAGAATCCCGGTGACACGGTACGAGGTTTCCGAGATCTGTACTAAAATAACGTCGGCAACACAGCGTGGGGACTACAACAAGTGCCAACAGTTGGTCGGTAAGATCAAGATTTGGGGCAAAGAGAGCGAAAGAAACAAAAAGTGTATCGTTGAAAACGATGCTGCTGCCACTGCATTAGCCTACGCCTTCATTTCTTTCTCAAACTCTTCGATTGAGAAAAACTTGGGCCTTCTAGAGAACATTCTGGGTATTTTGGCATGGATTCTTCCGAAGGGATCACAACATGGTTATAGTACTCAAATTCAAACACGATCAATGTTGAGTTCTGAAGCCTCTTTACGTTGCATGGTTTGGTTCCTCAACAGCAAAGACCTATCATCAAGGCAAAACGCAGCGTTGGTTCTGAAGCAAGTACCTACAGAGCCATTAGCAAAAACTGATGGTGTGATTGAAGCTTTAGTGAAGATGATCAAAGAGACCGTAGGCCCTTCTGCAACAAAAGCAAGCCTGAAGACAATTTTCCAGATGGTTTCTTCATCAAATATTGAGAAAGAGAAGATCATCAAAAGATGTGTTGAACTAGGCCTTGTTACGTTGTTGCTTGAAGCACTAGTGGATGGAGATAGAGGGATATGTGAGAAGGCTTTGGGAGTGTTGGATTGTTTATGTGATCATGAGGAAGGGAATGAAGTGGCTAAGGCTAATGTGTTGACTTTGCCTCTTGTGGTGAAGAAGATATTGAGGGTTTCTGGGTTGGCTTCTGATTTTGGAGTTTCTATTCTTTGGAAACTTTGTGACAAGAGGGATGAAGATATGGTGAAGGAGGCACTTCAAGTGGGAGCGTTTCAGAAGGTTCTGGTTTTGTTGCAGGTTGGGTGTGAAGAGAAAACCAAGGGAAAGGCCACTGATTTGTTGAAGGTGTTGAATGTTTATAAGAATACAGTGGAGTGTGTTGATTCGTCTTTGGATTTGAAGTATCTCAAGAAGCCCTTTTGA 1362 0.4574 MVLSWSRRRVFCRARKGKDLPGGAVNADDGDLDVVDVDVVVPTHFRCPITLDLMSDPVTLSTGITYDRDSIEKWIESGNRTCPVTNQPLTTFDMIPNHAIRRMIQEWCVEHRSFGFERIPTPRIPVTRYEVSEICTKITSATQRGDYNKCQQLVGKIKIWGKESERNKKCIVENDAAATALAYAFISFSNSSIEKNLGLLENILGILAWILPKGSQHGYSTQIQTRSMLSSEASLRCMVWFLNSKDLSSRQNAALVLKQVPTEPLAKTDGVIEALVKMIKETVGPSATKASLKTIFQMVSSSNIEKEKIIKRCVELGLVTLLLEALVDGDRGICEKALGVLDCLCDHEEGNEVAKANVLTLPLVVKKILRVSGLASDFGVSILWKLCDKRDEDMVKEALQVGAFQKVLVLLQVGCEEKTKGKATDLLKVLNVYKNTVECVDSSLDLKYLKKPF 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g1410 453 CDD RING-Ubox_PUB 42 94 IPR045210 -
Alju08g1410 453 ProSiteProfiles U-box domain profile. 40 114 IPR003613 GO:0004842|GO:0016567
Alju08g1410 453 SUPERFAMILY ARM repeat 198 417 IPR016024 -
Alju08g1410 453 Gene3D - 224 443 IPR011989 -
Alju08g1410 453 SUPERFAMILY RING/U-box 39 116 - -
Alju08g1410 453 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 35 115 IPR013083 -
Alju08g1410 453 PANTHER WDSAM1 PROTEIN 40 435 IPR045185 GO:0061630
Alju08g1410 453 FunFam RING-type E3 ubiquitin transferase 41 112 - -
Alju08g1410 453 Pfam U-box domain 41 112 IPR003613 GO:0004842|GO:0016567
Alju08g1410 453 SMART Ubox_2 44 107 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g1410 Alju-ChrAlju08 10930405 10931766 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g1410 38 453 U-box Gene Family AT5G37490 47.991 7.66e-123 363