Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g1408 ATGAAAAAAGTAAACTTTGATCTTGAAGTGGAGGCCTCCGCAGAAGAAAGTGAAATTGAAGTCAGCAGCCAGATTGCTTCCAATATATCCACTCAAGAAACTATTGCAGATCCTTGTATTGATCAAAACCTGTCCAACTCTTCCACCCCAAGAAATCCAACAGGGATAATTGATTTAAATTCAACTCCCATTTCACTTGACCTGACTCTCAACTTAAACAGTAAACCATTAGCAGTGTCAAGAGATTCTGTGCGACGCTCATTGTCTAGCACTAGTGAGAGTAGCAATGAACCTGCCTCTCAAACTACAGAAGCGACCATGGCCAGAATTTTTACATGCTATTACTGTCAACGCAGGTTTGTCAGCTCGCAGGCTCTCGGGGGCCACCAAAATGCACACAAGAGGGAAAGATCAATGGCAAAGAATGCTGTGAGGATGGGTTTTTTCCCTCAGAGGTATCCAAACACTCTGGCAGCTCTCCCTCTTCATGTTCCTCCCAGATCATTGGGCATGAAACCACACTCTTCACAGCACTGTGTCTTTTCACCAACAATTAAGGTTCAAGAGATGAAAAATAATACAGGATTTGAGGTAGGTTATTATGGTGAGCCAATTTTCTTTGGGAATAATCAATCTGGACTTGTTTGGCCTGGTAGTTTCCGTCAGATGGCTGACATAGGTGATGATCATAAGAATTTTCTGCTGACTGATAGTTCTGATACGAGTTTTAGGGAGGTGAGTCCACCAGTAGACGTAGAGAAGCCCACCCCAGATTTGACATTAAAACTTTGA 792 0.428 MKKVNFDLEVEASAEESEIEVSSQIASNISTQETIADPCIDQNLSNSSTPRNPTGIIDLNSTPISLDLTLNLNSKPLAVSRDSVRRSLSSTSESSNEPASQTTEATMARIFTCYYCQRRFVSSQALGGHQNAHKRERSMAKNAVRMGFFPQRYPNTLAALPLHVPPRSLGMKPHSSQHCVFSPTIKVQEMKNNTGFEVGYYGEPIFFGNNQSGLVWPGSFRQMADIGDDHKNFLLTDSSDTSFREVSPPVDVEKPTPDLTLKL 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g1408 263 ProSiteProfiles Zinc finger C2H2 type domain profile. 111 138 IPR013087 -
Alju08g1408 263 ProSitePatterns Zinc finger C2H2 type domain signature. 113 133 IPR013087 -
Alju08g1408 263 SUPERFAMILY beta-beta-alpha zinc fingers 109 139 IPR036236 -
Alju08g1408 263 MobiDBLite consensus disorder prediction 240 263 - -
Alju08g1408 263 Gene3D Classic Zinc Finger 86 147 - -
Alju08g1408 263 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 17 180 IPR044246 GO:0009788
Alju08g1408 263 MobiDBLite consensus disorder prediction 81 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g1408 Alju-ChrAlju08 10908022 10908813 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g1408 93 263 C2H2 Transcription Factor Family AT1G66140 40.796 2.95e-34 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Alju08g1408 None None None