Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g1406 ATGCCCTCACAAGGGATAGCCATCGAGCCCAGTTCCACAACATGTTCTCCTCCTGATCTTTCCCTTCACATAAGCCCTCCTCCTCCTCCTCCTCCTTCTTTGCCAAATCAAGCTCGTACTGATCTCTCTCTAGCCCCCAATTTCTTCACAGATCAACCTCCTCCTCTTTATTATCATTCTCATCCTCAAACTCAAAATCGCAACCCCACCACAGCCTCTCACTTGTTCAACCACATGAATCCGCCGCCACCGTCCGATGTCAGTCTAAGACCCATCAAAGGGATTCCGGTGTATCACAACCACCACCACCACCGCTGCTTCCCTTTCTTGCCCATGGACCATCCCACAGGCAAGGATCTTCATCATCATCATCACAAGATGTGGTTGCATCATCCTCCTAACACTTCTTCTTTGTCTTCTTCTTCTTGGGGTTATAATCATAATCATAACAATCATACCATGGGAGGAGGATCGGGTTTGGATAATCCGATGTGGGTCTTAAACGGGTCGCCGTCTAATTTCAAACCTCATAATCATCATCATCAGTTACACTATGGAGTTGGGGTAGGGGCTTCCCCTCATCATCATCATCATCACAGTGAAGAGGCCAATACATCTTCATCAGGGTTCATGATGAGATCGAGATATATGCCGAAACTACCCTCCAAGAGAAGCATGAGAGCTCCCAGAATGCGTTGGACTACCACCCTTCATGCCAGATTCGTTCACGCCGTTCAACTTCTTGGCGGCCATGAAAGAGCAACTCCAAAGTCAGTTCTGGAGCTGATGGATGTGAAAGATCTCACATTAGCTCATGTTAAAAGCCACTTGCAGATGTATAGAACAGTCAAGACTACTGACAAGCCTGCTGCTTCATCAGGCCAATCAGATGGATCTGGTGAAGATGACATGTCTCCGATGGGTGGCAACGCCGACCGTGGCGGTCTTAGTCATTTTTCCGATCAAAGAGGCCGAGCAGATCGGCCTGTGCAACAAGACATAGACCATCCTTCTTCTAATACTTTATGGAGTAATTCTTCAAGCAGAGAGTCATGGCCACAGAATAATTGTTATGATATGGATGGTCGCAGAAAAACTACCTTCCACTCACAACCAACGTCAAGATCAGCCCATCAAACTCAGGAATGTAATTCAAGCGAAGCACGACTACTACTGAAGAACAGTTTGTCGCATGTGAATATAGAATGCAAAAAGGATCCAAGTTTGGAGTTTACATTAGGAAGACCAGATTGGAATGGCAAAGGACTTGCCTAA 1275 0.4643 MPSQGIAIEPSSTTCSPPDLSLHISPPPPPPPSLPNQARTDLSLAPNFFTDQPPPLYYHSHPQTQNRNPTTASHLFNHMNPPPPSDVSLRPIKGIPVYHNHHHHRCFPFLPMDHPTGKDLHHHHHKMWLHHPPNTSSLSSSSWGYNHNHNNHTMGGGSGLDNPMWVLNGSPSNFKPHNHHHQLHYGVGVGASPHHHHHHSEEANTSSSGFMMRSRYMPKLPSKRSMRAPRMRWTTTLHARFVHAVQLLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDKPAASSGQSDGSGEDDMSPMGGNADRGGLSHFSDQRGRADRPVQQDIDHPSSNTLWSNSSSRESWPQNNCYDMDGRRKTTFHSQPTSRSAHQTQECNSSEARLLLKNSLSHVNIECKKDPSLEFTLGRPDWNGKGLA 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g1406 424 MobiDBLite consensus disorder prediction 57 78 - -
Alju08g1406 424 MobiDBLite consensus disorder prediction 1 20 - -
Alju08g1406 424 MobiDBLite consensus disorder prediction 282 382 - -
Alju08g1406 424 Pfam Myb-like DNA-binding domain 230 281 IPR001005 -
Alju08g1406 424 Gene3D - 228 285 - -
Alju08g1406 424 MobiDBLite consensus disorder prediction 333 355 - -
Alju08g1406 424 NCBIfam myb-like DNA-binding domain, SHAQKYF class 229 282 IPR006447 GO:0003677
Alju08g1406 424 MobiDBLite consensus disorder prediction 21 36 - -
Alju08g1406 424 SUPERFAMILY Homeodomain-like 226 282 IPR009057 -
Alju08g1406 424 MobiDBLite consensus disorder prediction 53 83 - -
Alju08g1406 424 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 18 420 IPR044847 GO:0000976|GO:0006355|GO:0010158
Alju08g1406 424 MobiDBLite consensus disorder prediction 318 332 - -
Alju08g1406 424 MobiDBLite consensus disorder prediction 282 300 - -
Alju08g1406 424 FunFam Myb family transcription factor 227 285 - -
Alju08g1406 424 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g1406 Alju-ChrAlju08 10887410 10892319 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g1406 90 421 G2-like Transcription Factor Family AT5G16560 47.788 6.68e-68 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Alju08g1406 Myb_DNA-binding 1.8e-05 CL0123