Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g1391 ATGAAACTGGGAGCTGTAAGCTCGAAGACAAAGAAAAATGAAGCCTTGCGTCTCTGCAGGGAACAAAATCGATTCATCAAAATGGCAATGGATTCAAGATATGATCTCGACTCCGAAAAGTTTATGGTGAAAATTGCTTCAAGGATTGGGACCTCAAGAACTACAATTATGACAATGGGTGATTCAGAGTCCTTCCCAGCATTCCCATTTGATAGAGCCGTTGAACAGGCAGTTGTATCTATAAAGGAAGGTGCATACTTACTGAAGTGTGGACAGAGAGGAAAGCCCAAGCTCTGCCTTTTTAGACTTTCTCCAGATGAAAAAACTTTGATTAGGTGTTCTGGGCAAAAAGAAAAGCATTTGCAACTGAGTGAAGTTACAAGAATTGTTCAAGAGCAGGGGATTATAAGGTCCCAGAGAATAAGCCAATCTGTAAAAGATTCCCATTCGTTTTCACTAATCTATGCAAATGGCGAACGCTCCCTTGATTTGATATGCAAGGACAAAGCACAGGCTACTTCTTGGTTAGTGGGATTGAGAGCTGTTATATCTAGGCCCCAGCATTCAAGGACGTTGAGTAGTTTAAGGACCCGTAAAGGAGTGCAGAGTTGTGTAAATAGTCCAGCTGGGTTCTTTCGGAGAAAGAAAAATCTTGGTCTTCTGGAGGATACTGTTGAATTTGCTCAGGTACACAGCTTACACGCGAGTCCTAACTTCTCACTTTCAGAAAGATGCTTTTCTGAGGGCTTATCAGACGCATCCAATAGTATTTATTCTTCAGAGTCTTTCCCATACAATTCTCAGAGCATAATGAATATTAAAGCCCCAGGTTCTGCTCATGCTGATCCAGATTTTCTCAATAAAAATGGCTCAGTATATTCTGACACAGAGTGTGAGAAGAATTCGTCCTACAAGCGTCCGCCTCATCCTTCCTCTCCTCATGTAGGAAACAACAACGTATTGAAGGATGTCATGGTATGGGGTGAAGAGATTGTAGGAGGTGGTAATAATGTTCATAGTACATTGCCTAAGTTACTAGAATCCACTGTGATGCTAGATGTAAAAAATATAGCTTTAGGAGGAAAGCATGCTGTTTTAGTCACAAGACAAGGGGAAGTGTTCTGCTGGGGTCAAGGGAAAGGGGGAAGGCTGGGCCACAAAATTGACATTGATGTTAGCTCTCCCAAAATTGTTGATTCTCTCAATGGGGTCCATGTAAAATCAGTTGCCTGTGGCGAGTATCATACGTGTGCTCTGACAGACACTGGTGTAGTATATACGTGGGGAAACGATGATGGTTGTGCAGATTCTGTAGGTTGTGGGAAAAGTAGAAGTCAGTGGATACCGCATAGACTTTCAGGACCTTTAGACGGTCTTCGTATTTTTAGTATTGCTTGTGGGGAATGGCATACCGCGATTGTCTCTTGCTGTGGAAGGCTATTTACATATGGTGATGGTACTTTTGGTGTTCTGGGGCATGGGAATCTTCAGAGAATTTCCCAACCAAAAGAAGTTGAGTCACTTCAAGGCAAGCGAGTGAGGTCTGTTGCTTGTGGATCATGGCACACAGCAGCTATTGTAGAACTTGTGTCTTCCCGTTGTAAGTACAGTACTTCTTGTAAGCTCTTTACCTGGGGCAATGGAGATGGTGGGCGGCTTGGTCATGCTGATAATGGAAGGAAGCTTTTACCAACATGTGTTACACAACTTGTGGACTATGACTTTGTTCAAGTATCTTGTGGAAGAATGTTGACTGTTGCACTTACTAATTTGGGTAAAGTTTTTACCATAGGAAGTAAGGTGCATGGACAGCTAGGAAACTCTCACACCAAGGAGAAGACCGCGACTCTTGTCGAAGGACACTTGAAACAGGAGTTTGTTAAGCAGATATCATGTGGTTCATATCATGTGGCTGTGTTGACATCTTCAGGTAGTGTCTATACATGGGGCGAGGGAACACATGGGCAGTTAGGGTTGGGTGATACTAAAGACCGGTACTCGCCTTCTTTTGTTGAGGCTCTAAAAGATAGGCAGATAGAGAGTATTGCTTGTGGCTCAAGCTTCACAGCTGCAATTTGTTTACACAAACCTGTCTCTATTGCTGACCAGTCAGCTTGTAGCAGTTGTGAGCTTCCATTTGGGTTCAGAAGAAAGAGGCATAACTGCTATAACTGTGGTCTTCTCTTTTGCAATTCATGTAGCAATAACAAAGTTACAAATGCACCTCTAGCCCCAAGTAGGAACAAGGCCTTTCGGGTTTGTGATCCGTGTTTTCATAAATGCCAAGGGATTACTCACTTACCTAAGGTATTTAAGTTGCAAAATTATAGCAGTATGCAGCATCTGAAGCGCCGGAGTAAATTTCCTGATCTGACAGAAAATGGAGGGGAAACAGCAGGGTCACCACGTTCTCTTTCATCGTTCAGCCAATCGTGCTACATGAAAAGCATGCCTAGTGGGAGGAAGGACTGGAAAAATCAACAAGAAAGCCAGAAACATGTGGAAAACTTTTCTTCATTGATGGATGGGGTGCCACAATGGGGGAAAGTTTCCTGCCCTGATATGTTTAAAACAAATTATACTGAAAATTCTTTCATGCATTTTTCTTCATTGAAGAACAAGTTAGCTTCTTCTAATCCATTGAGACTAGAATCTTCGGTATCTAGGATCCCTAATGCAGAGAAAGATATGCCAAAGTCTGACAAAGTCCTTGTAGAAGAAGTTCAGAGGCTGAGATCTATGGTTGGGAAGCTTGAAGAGCAATGTAAGCTCCAAAAGAGTATGTTAAAAGAATATCAAGAAAAGATTGAGAAGAGTATGTCGCTGGCGAAGGAGCAAGCTGCTAAATACAGGGCAGCAAAAGAGGTCATAAAAGTTTTGACTTCAAAACTTCAAACAATATCAGAAAAACCCGACGCAATCCAAGAAGGAAAAGTTGCGGTAAATGAATGCGTGCCTTATCTTTCAGATGTTGATACACCGAGAAGTTGCAACTTAGACATTCAATCTGATTCTCCTATGGTGTTCTCTGACAAATTAAGATCCAAATTTGGAAGAAGCAAATTCCTCCACAGTGGTAAATCTAGGGTGAATTTTCAAGTCACTGGAGTCCAACAATCTCAGCAAGATGGTAACAAAGGATCAAATGATGAATGGACAGAAGAACAGTACAACCCTGGTGTGTATATCACTCTCACTTCCTTACCCTGTGGAGAAATTGGCCTTAAAAGACTGAGATTCAGCCGGAAACGATTCTCGGAACAAGAAGCAGCACTGTGGTGGGAAGAGAATCAAGCAAGAGTGTGCAGTGATTATGGGATTGAAGGATTCAGTAACAACAGCCAAACTCAATTGTAA 3357 0.4218 MKLGAVSSKTKKNEALRLCREQNRFIKMAMDSRYDLDSEKFMVKIASRIGTSRTTIMTMGDSESFPAFPFDRAVEQAVVSIKEGAYLLKCGQRGKPKLCLFRLSPDEKTLIRCSGQKEKHLQLSEVTRIVQEQGIIRSQRISQSVKDSHSFSLIYANGERSLDLICKDKAQATSWLVGLRAVISRPQHSRTLSSLRTRKGVQSCVNSPAGFFRRKKNLGLLEDTVEFAQVHSLHASPNFSLSERCFSEGLSDASNSIYSSESFPYNSQSIMNIKAPGSAHADPDFLNKNGSVYSDTECEKNSSYKRPPHPSSPHVGNNNVLKDVMVWGEEIVGGGNNVHSTLPKLLESTVMLDVKNIALGGKHAVLVTRQGEVFCWGQGKGGRLGHKIDIDVSSPKIVDSLNGVHVKSVACGEYHTCALTDTGVVYTWGNDDGCADSVGCGKSRSQWIPHRLSGPLDGLRIFSIACGEWHTAIVSCCGRLFTYGDGTFGVLGHGNLQRISQPKEVESLQGKRVRSVACGSWHTAAIVELVSSRCKYSTSCKLFTWGNGDGGRLGHADNGRKLLPTCVTQLVDYDFVQVSCGRMLTVALTNLGKVFTIGSKVHGQLGNSHTKEKTATLVEGHLKQEFVKQISCGSYHVAVLTSSGSVYTWGEGTHGQLGLGDTKDRYSPSFVEALKDRQIESIACGSSFTAAICLHKPVSIADQSACSSCELPFGFRRKRHNCYNCGLLFCNSCSNNKVTNAPLAPSRNKAFRVCDPCFHKCQGITHLPKVFKLQNYSSMQHLKRRSKFPDLTENGGETAGSPRSLSSFSQSCYMKSMPSGRKDWKNQQESQKHVENFSSLMDGVPQWGKVSCPDMFKTNYTENSFMHFSSLKNKLASSNPLRLESSVSRIPNAEKDMPKSDKVLVEEVQRLRSMVGKLEEQCKLQKSMLKEYQEKIEKSMSLAKEQAAKYRAAKEVIKVLTSKLQTISEKPDAIQEGKVAVNECVPYLSDVDTPRSCNLDIQSDSPMVFSDKLRSKFGRSKFLHSGKSRVNFQVTGVQQSQQDGNKGSNDEWTEEQYNPGVYITLTSLPCGEIGLKRLRFSRKRFSEQEAALWWEENQARVCSDYGIEGFSNNSQTQL 1118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g1391 1118 PRINTS Chromosome condensation regulator RCC1 signature 373 389 IPR000408 -
Alju08g1391 1118 PRINTS Chromosome condensation regulator RCC1 signature 639 660 IPR000408 -
Alju08g1391 1118 PRINTS Chromosome condensation regulator RCC1 signature 464 480 IPR000408 -
Alju08g1391 1118 PRINTS Chromosome condensation regulator RCC1 signature 480 494 IPR000408 -
Alju08g1391 1118 PRINTS Chromosome condensation regulator RCC1 signature 354 367 IPR000408 -
Alju08g1391 1118 PRINTS Chromosome condensation regulator RCC1 signature 581 599 IPR000408 -
Alju08g1391 1118 PRINTS Chromosome condensation regulator RCC1 signature 423 439 IPR000408 -
Alju08g1391 1118 CDD PH_PLC_plant-like 72 184 - -
Alju08g1391 1118 Gene3D - 73 191 IPR011993 -
Alju08g1391 1118 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 516 526 IPR000408 -
Alju08g1391 1118 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 371 422 IPR000408 -
Alju08g1391 1118 ProSiteProfiles BRX domain profile. 1051 1106 IPR013591 -
Alju08g1391 1118 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 592 643 IPR000408 -
Alju08g1391 1118 SUPERFAMILY FYVE/PHD zinc finger 701 774 IPR011011 -
Alju08g1391 1118 Pfam Transcription factor regulating root and shoot growth via Pin3 1051 1105 IPR013591 -
Alju08g1391 1118 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 702 766 IPR013083 -
Alju08g1391 1118 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 540 591 IPR000408 -
Alju08g1391 1118 SMART fyve_4 694 763 IPR000306 GO:0046872
Alju08g1391 1118 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 644 695 IPR000408 -
Alju08g1391 1118 Pfam FYVE zinc finger 702 762 IPR000306 GO:0046872
Alju08g1391 1118 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 423 477 IPR000408 -
Alju08g1391 1118 MobiDBLite consensus disorder prediction 787 807 - -
Alju08g1391 1118 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 700 762 IPR017455 -
Alju08g1391 1118 SUPERFAMILY PH domain-like 73 183 - -
Alju08g1391 1118 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 118 963 - -
Alju08g1391 1118 Gene3D - 530 701 IPR009091 -
Alju08g1391 1118 Gene3D - 284 434 IPR009091 -
Alju08g1391 1118 Gene3D - 435 529 IPR009091 -
Alju08g1391 1118 Pfam Regulator of chromosome condensation (RCC1) repeat 423 473 IPR000408 -
Alju08g1391 1118 Pfam Regulator of chromosome condensation (RCC1) repeat 542 588 IPR000408 -
Alju08g1391 1118 Pfam Regulator of chromosome condensation (RCC1) repeat 371 419 IPR000408 -
Alju08g1391 1118 Pfam Regulator of chromosome condensation (RCC1) repeat 643 692 IPR000408 -
Alju08g1391 1118 Pfam Regulator of chromosome condensation (RCC1) repeat 478 526 IPR000408 -
Alju08g1391 1118 Pfam Regulator of chromosome condensation (RCC1) repeat 592 640 IPR000408 -
Alju08g1391 1118 Pfam Pleckstrin homology domain 75 181 IPR001849 -
Alju08g1391 1118 MobiDBLite consensus disorder prediction 296 317 - -
Alju08g1391 1118 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 478 529 IPR000408 -
Alju08g1391 1118 SMART PH_update 80 186 IPR001849 -
Alju08g1391 1118 Coils Coil 915 949 - -
Alju08g1391 1118 SUPERFAMILY RCC1/BLIP-II 323 696 IPR009091 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g1391 Alju-ChrAlju08 10752333 10760416 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g1391 1051 1111 Major Intrinsic Protein MIP AT1G31880 44.262 3.01e-09 58.5