Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g1387 ATGGATGAAGAAGAAGAACGAAGCCTAGCAAGCTTCCTAAGATGGGCAAGAGAGCTTGGAATATCAGACGCAGCAATCACGAATCTACCTCAACATTCTCCTTCATGTCTGGATTATTCTCTCTGCGTCTCCCATTTTCCTCATTCTGGCGGTAGAGGTTTGGGTGCTGTGCGAGATCTCAGAAGGGGAGAATTGATAATCAGAGTTCCAAAATCTGCCTTAATGACATCAGAGAATGTCATGCAAGATAAGAAGCTCTCAGTTGCTGTTAATAACCACCCTTATCTCTCATCCTCTCAGATATTGATCGTTTGCTTATTATATGAACTGGGCAAGGGAAAATCTTCAAAGTGGCATCCTTACCTCATTCATTTGCCACATACTTATGACATCCTAGCTACATTTGGTGAATTTGAAAAACAAGCTCTTCAAGTGGATGAGGCTCGGTGGGTTACGGAAAAGGCTGTATTGAAGACCAAATCAGAGTGGAAAGAAGCCAATGCTTTGATGGAAGAAATCAAACTCAAGTCCCAACTTTTAACGTTCAAGGCATGGCTCTGGGCTACTGCAACGATATCGTCCCGTACATTGCACATACCATGGGATGAAGCTGGCTGTTTATGCCCTGTGGGTGACTTGTTTAATTATGATGCACCTGGAAGGGAGCCATCTGATCCTGAAGATAAGGAGATTCTATCATCCAAATCTTCCTTCCAAGTCACTTCTATCTCAAATGTAGAGAATACTTTTACGTTAGATGCAGAGGAGCTTGATTCTTATTCTCAGAGATTAACAGATGGTGGGTTTGAGGAAGATGTTAATTCATATTGCTTTTATGCTAGGGAAAATTACAAGCAAGGAGAGCAGGTTTTATTATGCTATGGACTGTACACAAATTTAGAGCTTCTTGAACACTATGGTTTTCTCCTACAAGAAAATCCAAACGACAAAGTTTGTATTCCTCTTGAATCTGCTGTATATTCTTCCAGATCATGGCCTAAAGAGTCGCTCTATATTTGCTACGACGGGAAGCCTTCCTTCGCATTACTGTCGGCATTGAGGTTGTGGGCGACTCCTAAAAATAAGCGCAAGTCTGTTGGGCATCTTGTGTATTCCGGTTCTCAATTGTCTGTGGACAATGAAATTGTTGTCATGAAATGGCTGTCAAAGACTTGCGACTTTGCGTTGAATAGTTTGCCGACATCAATTGATGAAGACACTATACTCCTGAATGCAATGGATAATAGCCAAGATTTTTCTAGTTTCATGGAAATTACCAAACTGTTGTCTTCTAGGGATGAGATTTGTGCATTTTTGGAAGCTAATAATCTGCAGGATGGCCATGATTTAACTGATGTACACTTAGTATCCGGAAAAGTCAGAAGGTCCATGGACAAGTGGAAACTGGCTGTTCAATGGCGGCTTAGGTATAAAAAAGTCCTTGCGAATTGTATCTCTTATTGCAATGAAATGCTTGAGTCTCTCTTGACGTAA 1494 0.4116 MDEEEERSLASFLRWARELGISDAAITNLPQHSPSCLDYSLCVSHFPHSGGRGLGAVRDLRRGELIIRVPKSALMTSENVMQDKKLSVAVNNHPYLSSSQILIVCLLYELGKGKSSKWHPYLIHLPHTYDILATFGEFEKQALQVDEARWVTEKAVLKTKSEWKEANALMEEIKLKSQLLTFKAWLWATATISSRTLHIPWDEAGCLCPVGDLFNYDAPGREPSDPEDKEILSSKSSFQVTSISNVENTFTLDAEELDSYSQRLTDGGFEEDVNSYCFYARENYKQGEQVLLCYGLYTNLELLEHYGFLLQENPNDKVCIPLESAVYSSRSWPKESLYICYDGKPSFALLSALRLWATPKNKRKSVGHLVYSGSQLSVDNEIVVMKWLSKTCDFALNSLPTSIDEDTILLNAMDNSQDFSSFMEITKLLSSRDEICAFLEANNLQDGHDLTDVHLVSGKVRRSMDKWKLAVQWRLRYKKVLANCISYCNEMLESLLT 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g1387 497 Pfam SET domain 51 295 IPR001214 GO:0005515
Alju08g1387 497 SUPERFAMILY SET domain 7 313 IPR046341 -
Alju08g1387 497 CDD SET_LSMT 40 309 - -
Alju08g1387 497 Gene3D set domain protein methyltransferase, domain 1 6 309 - -
Alju08g1387 497 ProSiteProfiles SET domain profile. 39 295 IPR001214 GO:0005515
Alju08g1387 497 Pfam Rubisco LSMT substrate-binding 344 481 IPR015353 -
Alju08g1387 497 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 305 417 IPR036464 -
Alju08g1387 497 Gene3D - 322 496 IPR036464 -
Alju08g1387 497 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 7 426 - -
Alju08g1387 497 FunFam Protein SET DOMAIN GROUP 40 9 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g1387 Alju-ChrAlju08 10726411 10729081 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g1387 7 323 NAC Transcription Factor Family AT3G56570 22.841 1.29e-08 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Alju08g1387 SET 1.7e-09 No_clan