Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g1371 ATGAAGCTTTCAACATCAGGGTTGGGTCAGCAGGGACAAGAAGGAGGAGGAGGGGAGAAGAAATGTCTGAATTCCGAGCTATGGCATGCATGCGCGGGTCCTCTCGTGTCCCTACCAAATGCAGGGACTCGTGTGGTTTACTTCCCACAGGGTCATAGCGAGCAGGTTGCAGCCACAACTAACAGAGAACTTGATGGCCACATACCCAATTACCCGAGCTTGCCGCCCCAGTTAATTTGCCAACTTCATAATATCACAATGCATGCTGATGTTGAAACAGATGAAGTATATGCTCAAATGACACTGCAGCCATTGACTCCGCAAGAGCAGAAGGAAACATTGCTTCCCTTGGAATTGGGCATTCCGAGCAAACAGCCCTCAAATTATTTTTGCAAGACATTAACGGCGAGTGACACCAGCACACATGGAGGGTTTTCTGTTCCTCGCCGTGCGGCTGAGAAAGTTTTCCCTCCACTGGATTTCTCACAGCAACCACCGGCACAAGAACTAATTGCTAGGGACCTCCATGATGTTGAGTGGAAGTTCAGACATATTTTTCGCGGACAGCCAAAACGACACCTTCTTACAACAGGCTGGAGTGTATTTGTTAGTGCCAAGAGACTTGTGGCTGGAGATTCTGTGCTATTTATATGGAATGAAAAGAATCAGCTACTTTTAGGAATACGTCGTGCCAGTCGGCCTCAAACCGTGATGCCATCATCAGTTCTTTCAACTGATAGTATGCACATTGGACTTCTTGCAGCTGCTGCTCATGCTGCTGCAACTAATAGCTGTTTTACTGTGTTCTATAATCCAAGGGCTAGTCCTTCTGAGTTTGTCATACCACTTTCAAAATATGTCAAGGCTGTGTACCATACACGTGTTTCAGTTGGCATGCGATTCAGGATGCTTTTTGAGACCGAGGAATCAAGTGTACGCAGGTACATGGGAACAATAACTGGCATAAGCGATCTGGATCCTGTTCGTTGGCCAAATTCTCATTGGCGATCTGTCAAGGTTGGTTGGGATGAATCAACAGCTGGTGATAGGCAGCCCCGGGTATCATTATGGGAAATTGAGCCTTTGACTACATTCCCAATGTATCCATCACTCTTCCCCCTCAGATTGAAGCGACCATGGCATCCTGGCTCTTCATCTTTGCATGATGGAAGAGACGACTCAGGTCTGATGTGGCTGAGAGGTGGACCGGGAGATCAAGGTCTCAGCTCCCTCAATTTTCAAAGCAGCAGTTTGTTGCCATGGATGCAGCAGAGGCTAGATCCAACTTTGCTAGGAAATGACCATAATCCACAGTATCAAACCATGTTGGCAGCTAATTTGCAGAACCTAGGGAGTGGAGATCTCTTGCGTCAACAAATGATGCATCTGCAACAACCCTTCCATTATCTTCAGCAATCAGGAAACCCGAATTCTCTGCAGCTTCAGCAGCAGCATCAAGCAATTCAGCAATCGATGAGTTCCAACATCCTTCAGCCACAAACTCAAATGTTGGCAGAGAACTTGTCTCAGGCCCTCCTTCAGAAACCACATAACAATCAAGAAGACCAAGCACCGCAGCCACAGCAGCAGCAACAACAGAATAATTATCATGATGCATTTTTTATCCAGGGTGATCAGCTCCCACAGAGGCAACACTCCCATGCTGCTTCACCATCATATTCGAAACCTGATTTCTTTGATTCGAGCATAAAGTTCTCTTCGGTTTCCCCTGCGCAGAACATGCTCGGTTCACTTGGTCCTGAAGGGAGTAGCAATATTTTCAACTTACCAAGAAGCAGTCAGTCCGTGCTGACTGAACAATTGACCCAACAATCATGGAGTCCGAAGTATCCGCCCGTGCAGGTGAGTGCTGCTTTTGGCAACTCAATATCGCACTCACAGTATACTGAGAAAGATTCTGCAACGGTGCCATCACATTGTACTTCAGATGCCCACAATCCTACTCTCTTTGGAGTCAATATTGATTCGTCTGGACTTCTGCTCCCCACCACTGTTCCTGGTTTTTCAACGTCCTCGGTTAGTACTGATGCATCAACCATGCCATTAGGGGACTCTGGATTTCAGGCTCCTCTGTATAATTGTGTGCAAGATTCTGCGGAGTTGATTCAGAGTTCAGGGCAAGTTGACCCGCAAAACCAAACTCCGACATTTGTCAAGGTCTACAAATCAGGTTCGGTTGGGCGCTCACTTGATATCTCTCGGTTCAGCAGCTATCATGAGCTGAGGGAGGAGTTGGCCCAGATGTTTGGAATTGAGGGGAAGTTAGAAGACCCTCTTAGATCAGGCTGGCAGCTTGTATTCGTCGACAGGGAGAATGATGTTCTTCTCCTTGGAGACGATCCCTGGGAATCATTCGTCAATAATGTTTGGTACATCAAGATACTCTCACCTGAGGATATTATGAAGATGGGCGAGCAATCAGTGGAATCGTCGCTGGGTCCGAACGGGGGACAAAGGATGAACAGCAGCACTGCAGAATCTCAGGACCTTTCTGGCTTTCCATCAATGGGCTCGCTTGAATACTGA 2547 0.4723 MKLSTSGLGQQGQEGGGGEKKCLNSELWHACAGPLVSLPNAGTRVVYFPQGHSEQVAATTNRELDGHIPNYPSLPPQLICQLHNITMHADVETDEVYAQMTLQPLTPQEQKETLLPLELGIPSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRASRPQTVMPSSVLSTDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLSKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGDRQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGSSSLHDGRDDSGLMWLRGGPGDQGLSSLNFQSSSLLPWMQQRLDPTLLGNDHNPQYQTMLAANLQNLGSGDLLRQQMMHLQQPFHYLQQSGNPNSLQLQQQHQAIQQSMSSNILQPQTQMLAENLSQALLQKPHNNQEDQAPQPQQQQQQNNYHDAFFIQGDQLPQRQHSHAASPSYSKPDFFDSSIKFSSVSPAQNMLGSLGPEGSSNIFNLPRSSQSVLTEQLTQQSWSPKYPPVQVSAAFGNSISHSQYTEKDSATVPSHCTSDAHNPTLFGVNIDSSGLLLPTTVPGFSTSSVSTDASTMPLGDSGFQAPLYNCVQDSAELIQSSGQVDPQNQTPTFVKVYKSGSVGRSLDISRFSSYHELREELAQMFGIEGKLEDPLRSGWQLVFVDRENDVLLLGDDPWESFVNNVWYIKILSPEDIMKMGEQSVESSLGPNGGQRMNSSTAESQDLSGFPSMGSLEY 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g1371 848 SMART B3_2 130 232 IPR003340 GO:0003677
Alju08g1371 848 Gene3D - 718 811 - -
Alju08g1371 848 Gene3D - 128 231 IPR015300 -
Alju08g1371 848 MobiDBLite consensus disorder prediction 814 848 - -
Alju08g1371 848 Pfam B3 DNA binding domain 130 231 IPR003340 GO:0003677
Alju08g1371 848 CDD B3_DNA 129 230 IPR003340 GO:0003677
Alju08g1371 848 Gene3D - 294 366 - -
Alju08g1371 848 FunFam Auxin response factor 128 232 - -
Alju08g1371 848 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 19 811 IPR044835 GO:0003677|GO:0006355|GO:0009725
Alju08g1371 848 ProSiteProfiles B3 DNA-binding domain profile. 130 232 IPR003340 GO:0003677
Alju08g1371 848 FunFam Auxin response factor 717 811 - -
Alju08g1371 848 SUPERFAMILY DNA-binding pseudobarrel domain 115 259 IPR015300 -
Alju08g1371 848 MobiDBLite consensus disorder prediction 815 841 - -
Alju08g1371 848 SUPERFAMILY CAD & PB1 domains 716 796 - -
Alju08g1371 848 Pfam AUX/IAA family 718 808 IPR033389 -
Alju08g1371 848 Pfam Auxin response factor 256 339 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Alju08g1371 848 ProSiteProfiles PB1 domain profile. 722 806 IPR000270 GO:0005515
Alju08g1371 848 FunFam Auxin response factor 294 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g1371 Alju-ChrAlju08 10551755 10557966 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g1371 100 813 B3 DNA Binding Superfamily AT5G37020 69.433 0.0 916
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Alju08g1371 AUX_IAA 3.7e-08 CL0072