Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g1359 ATGCAGTCGGTGCTGAAGGAATACTTCGGGTTCTCCGAGTTCCGCCCGTATCAGAAGGATGTCATCGAGAAAATATTACAGAAAAGGGACTGCTTGGTAGTCATGGCTACTGGTAGTGGGAAGTCCTTGTGCTATCAGGTACCTCCATTGGTTGCTAGAAAGACTGGGATAGTTGTTAGCCCTCTTATTTCATTAATGCAAGACCAGGTAATGGCTTTGAAACAACGGGGTATCAGAGCTGAGTATCTCGGGAGCGCACAGACTGACCCCACTGTCCAGACTAAAGCTGAGAGTGGCCAATTTGACATTCTGTTCTTGACTCCTGAGAAAGCGTGCTCAATTCCTGCCAGCTTCTGGTTGAACTTGCTGGAGGCAGGTATTTGTCTTTTTGCTGTTGACGAGGCACATTGCATATCAGAATGGGGCCATGATTTTAGGGTGGAATACAAGCAACTAGACAAGTTACGTGGTGTTCTATCTGATGTACCTTTTGTTGGCCTAACTGCAACTGCTACTGAAAAGGTTCGAGTTGACATAATCAGTTCCTTGAAGATGTGCAATCCTTATGTTTCAGTTGGTTCATTTGATCGCACCAATCTTTTCTATGTTGTCAAGCCTTTTAACCCCGGACAACATTTTGTAAATGAGCTTGTGCAAGAGATTTCGAAAAAAGTAGCTAGTGGGGGTTCCACTATAATCTACTGCACTACAGTCAAAGATGTGGAACAGATTTCCAAGTCACTTTTGGAAGCAGGTGTTGCAGCGGGGATGTATCATGCGCAAATGAGTAATAAATCTCGTGAGGAATCTCATAGATTATTTGTTAGAGATGAAGTGCGAGTCATGGTAGCAACTGTTGCTTTTGGTATGGGTATAGATAAGCCTGACATAAGACAGGTGATTCACTATGGCTGCCCTAAGAGCCTGGAGTCCTACTACCAGGAAAGTGGGCGATGTGGTCGAGATGGTATAGCTTCTTTTTGTTGTCTTTACTACACAAGAAGCGACTTTGCAAAGGGCAAGTTTTATTGTGGAGAATTACAAACAGCAAAACAAAGAAAAGCTGCCATGGAATCATTAATGGCGGCTGAACGCTATTGCTTGCTGACAACTTGCAGAAGAAAGTTTTTGCTTGAATACTTTGGGGAAAATGTTTCATCTGATAGATGTGGAAATTGTGATAACTGCATTGTCTCAAAGAAGCAACGGGACATGTCAACAGAAGTATTTCTTCTACTGGCTTGCATTCAATCATGCAGGGGAAGATGGGGCCTGAACATGCCCATTGACATCCTGCGTGGGTCTCGAGCCAAGAAAATTCTTGATGCTCAGTTTGACAAGCTTCCTCTTCATGGTCTTGGGAAAGATCACCCATCAAATTGGTGGAAAGCGCTAGGTCATCAATTAATTTCTCATGGTTATTTGAAGGAGACTGTTAATGACGTGTACAGAACTGTGAGTGTCAGTTCAAAAGGAATGCAATTTCTAGCCTCTTCTACACCGGATTATCAACCACCCATAGTTCTGACAGTAACTGCTGAAATGCTTGATGAGGAGGAAAATAGATCTGCTCCAGAAGAATTCCAAAGTTTAGCCACTTCAGATACTGAAGGTTTTTCAGAGGCTGAGGTGCAACTCTACCAAATGCTTTTGGAAGAGAGAATGAACCTTGCAAGAAGTGTTGGAACAGCTCCATATGCCATTTGTGGCGATCAAACAATCAAGAAAATTGCACTGCAAAGACCATCTACAAAAGCAAGGCTAGCAAACATTGATGGTGTGAATCAGCACCTGCTAACCAAATATGGAGATCATTTTCTTCAAGCTATTCAACAATTGTCGCAAGGATTGAAGCTTTCACTGGATAAAGAAGCAAGCTTGCAAGCTCCTGCAGTAAGGAAAGTGTCCACTGTAAGTCTAACCAATGAACCAAAGAAGCTGACGCAAGCAAAGTACGAGGCCTGGAAAATGTGGCAGGAAGATGGCCTTTCTATTCAGATGATTGCTAACCTTCCAAGCAGATCAGCTCCTATAAAGGAACAGACTGTTGCTGATTATCTGCTGGAAGCTGCCCGGGAAGGATTGCCTTTTGATTGGACTAGATTCTGTGAGATGGTTGGACTGACACCTGAAATCGTCTCGGAAATTCAGGGTGCTATTCTAAAGGTTGGATCTACAGAAAAATTGAAGCCTATAAAAAATGAGTTACCAGAAGAAGTAAGCTATTTACAGATCAAGACTTATTTGACAATGCAAAACACTGGAATATCTCTTGAAGGCACTCAGCACGGGAGCAGCCAAGCAGAGAAAGATGATGAACTCGTGAAGGAGGCATCAGATTTATTGCAGAATCCATTAGATACATGCAACATGGAAGAAAAAAGTGGGGAAATTGACGTGTCTCTTGAGAGTCCAATGAAAAGAAATGACCCAGATAAGGACGAGGAATCGACCGGACCAGCCAATGGTTGCCAGGTACAGAATCTTCCACCAGTCTGCGAGAAGGAGTTGCCAAACAAACGCCAGAAAGTCAGTGAACAAAATGAAGAAAATCCTATCAAAGTGAAGGCAACAGAGAGTTCTGTAGTAGAGTGGCTGCAGAACCATGCAGGGGCTACATTGACTGATATTCTGAAGAACTTCAATGGATCCACTGAAGATTCCGTGGTGGAACTTCTGAATTGCCTTGAGAGTGAGTTTTTGATCTATAAGAAAAATAGCATGTACAGGCTTATGTGA 2739 0.4297 MQSVLKEYFGFSEFRPYQKDVIEKILQKRDCLVVMATGSGKSLCYQVPPLVARKTGIVVSPLISLMQDQVMALKQRGIRAEYLGSAQTDPTVQTKAESGQFDILFLTPEKACSIPASFWLNLLEAGICLFAVDEAHCISEWGHDFRVEYKQLDKLRGVLSDVPFVGLTATATEKVRVDIISSLKMCNPYVSVGSFDRTNLFYVVKPFNPGQHFVNELVQEISKKVASGGSTIIYCTTVKDVEQISKSLLEAGVAAGMYHAQMSNKSREESHRLFVRDEVRVMVATVAFGMGIDKPDIRQVIHYGCPKSLESYYQESGRCGRDGIASFCCLYYTRSDFAKGKFYCGELQTAKQRKAAMESLMAAERYCLLTTCRRKFLLEYFGENVSSDRCGNCDNCIVSKKQRDMSTEVFLLLACIQSCRGRWGLNMPIDILRGSRAKKILDAQFDKLPLHGLGKDHPSNWWKALGHQLISHGYLKETVNDVYRTVSVSSKGMQFLASSTPDYQPPIVLTVTAEMLDEEENRSAPEEFQSLATSDTEGFSEAEVQLYQMLLEERMNLARSVGTAPYAICGDQTIKKIALQRPSTKARLANIDGVNQHLLTKYGDHFLQAIQQLSQGLKLSLDKEASLQAPAVRKVSTVSLTNEPKKLTQAKYEAWKMWQEDGLSIQMIANLPSRSAPIKEQTVADYLLEAAREGLPFDWTRFCEMVGLTPEIVSEIQGAILKVGSTEKLKPIKNELPEEVSYLQIKTYLTMQNTGISLEGTQHGSSQAEKDDELVKEASDLLQNPLDTCNMEEKSGEIDVSLESPMKRNDPDKDEESTGPANGCQVQNLPPVCEKELPNKRQKVSEQNEENPIKVKATESSVVEWLQNHAGATLTDILKNFNGSTEDSVVELLNCLESEFLIYKKNSMYRLM 912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g1359 912 ProSiteProfiles HRDC domain profile. 540 620 IPR002121 GO:0003676
Alju08g1359 912 Pfam RQC domain 400 497 IPR018982 GO:0006260|GO:0006281|GO:0043138
Alju08g1359 912 SUPERFAMILY "Winged helix" DNA-binding domain 395 501 IPR036390 -
Alju08g1359 912 MobiDBLite consensus disorder prediction 784 831 - -
Alju08g1359 912 NCBIfam RecQ family ATP-dependent DNA helicase 3 456 IPR004589 GO:0004386|GO:0006310
Alju08g1359 912 Gene3D HRDC domain 536 616 IPR044876 -
Alju08g1359 912 FunFam ATP-dependent DNA helicase 1 195 - -
Alju08g1359 912 CDD SF2_C_RecQ 197 332 - -
Alju08g1359 912 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 22 189 IPR014001 -
Alju08g1359 912 SMART RQC_2 404 508 IPR018982 GO:0006260|GO:0006281|GO:0043138
Alju08g1359 912 Gene3D - 197 399 IPR027417 -
Alju08g1359 912 SMART hrdc7 540 620 IPR002121 GO:0003676
Alju08g1359 912 Pfam HRDC domain 545 610 IPR002121 GO:0003676
Alju08g1359 912 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 213 365 IPR001650 -
Alju08g1359 912 Pfam Helicase conserved C-terminal domain 216 322 IPR001650 -
Alju08g1359 912 PANTHER DNA HELICASE RECQ FAMILY MEMBER 2 682 - -
Alju08g1359 912 FunFam ATP-dependent DNA helicase 399 523 - -
Alju08g1359 912 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 54 337 IPR027417 -
Alju08g1359 912 Pfam Helix-turn-helix domain 652 749 IPR029491 -
Alju08g1359 912 Gene3D - 400 524 IPR036388 -
Alju08g1359 912 Pfam RecQ zinc-binding 336 396 IPR032284 -
Alju08g1359 912 FunFam ATP-dependent DNA helicase 197 398 - -
Alju08g1359 912 SMART helicmild6 242 323 IPR001650 -
Alju08g1359 912 SUPERFAMILY HRDC-like 539 614 IPR010997 GO:0000166|GO:0044237
Alju08g1359 912 MobiDBLite consensus disorder prediction 792 817 - -
Alju08g1359 912 SMART ultradead3 10 205 IPR014001 -
Alju08g1359 912 Pfam DEAD/DEAH box helicase 16 175 IPR011545 GO:0003676|GO:0005524
Alju08g1359 912 Gene3D - 1 195 IPR027417 -
Alju08g1359 912 CDD DEXHc_RecQ 2 196 - -
Alju08g1359 912 FunFam ATP-dependent DNA helicase 536 626 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g1359 Alju-ChrAlju08 10452944 10461486 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g1359 231 323 Eukaryotic Initiation Factors Gene Family AT5G11170 31.183 2.68e-08 55.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju08g1359 08 10452944 10461486 Alju08g1359 08 10452944 10461486 ECH