Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g1343 ATGAAGCTCTATTCACCTTCATTGCAACCTTGCCTTTTGGTCATTGCCATTCTTTTTCCTCTGGCTATTGCTGACTTAAATTCAGAAAAGCAAGCCCTTCTTACTTTTGCTAATGCTATCCCCCATCGCCGGAACCTTAAGTGGGATCCATCCGCCTCTGTCTGTAAGTCTTGGGTTGGCATCACTTGCAATCCAAATGGCACTCACGTTATTTCTGTCAGGCTCCCGGGCATTGGACTTGTTGGATCCATCCCATCTAACACACTTGGAAAGCTTGACAACCTTAAAACTATAAGCCTTCGATCCAACCTACTCAGTGGAAATTTACCTAGCGATATTACTTCTCTTCCTTCTCTCCAGTATCTCTACCTCCAGCATAATAACCTTTCAGGGGATATACCTGCCTCATTTTCACCCCAACTTAATGCACTTGATCTGTCTTATAATTCTTTCACCGGTGTAATTCCAGAGACATTACAAAATTTGACAGAACTGACTAGATTATACCTTCAGAACAACTCCCTTTCCGGATGGATACCTAATCTCAATGTCCCTAAGCTCAAGCTTTTGAACTTAAGTTACAACCAATTGAATGGCTCTATCCCGACAGCTCTTCAGAAGTTTCCTAATTCATCCTTTGAAGGGAATTCTCTCTTGTGTGGACAACCTCTAAAACCTTGCTCTTCTGTCCCTCCTACATCTCCTCCTGCCTTACCTCCGGTGGCTCCAAAAAGACAAAGCTCCAAACATGTATTGAGTAAGGTAGCTATCATTGCAATTGCTGTTGGAGGAGCTGTTCTGCTGTTACTTATAGCTATTGTTATTCTTCTCTGTTGTTTAAAGAAGAAAGATGATGGAAGATCCAGTGTAATCAAAGGGAAGGGTCCTAGTGGTGGGAGGGGTGAGAAGCCGAAAGAAGAGTTTGGCAGTGGGGTGCAAGAACCAGAGAAAAACAAGTTGGTTTTCTTTGAGGGCTGTTCTTATAATTTTGATCTCGAGGATTTGCTAAGAGCTTCAGCTGAAGTTCTGGGAAAGGGCAGCTATGGCACTGCATACAAGGCTGTATTGGAGGAATCAACTACTGTTGTGGTGAAAAGGTTGAAAGAAGTAGTGGTGAGCAAGAAAGACTTTGAACAGCAGATGGAGACTGTGGGAAGGGTTGGGCAGCATCCAAATGTTGTACCCCTTCGTGCTTATTATTATTCAAAGGATGAGAAGCTTTTAGTCTATGACTATATCCCAGGAGGCAACCTGTCATCGCTATTGCATGGTAGTAGGTCAGGTGGAAGAGCTCCGTTAGATTGGGATTCCCGACTGAAGGTCTCCCTAGGAGCCGCCCGAGGAATAGCCCACATGCATTCTGTTGGGGGTCCAAAATTCACTCATGGAAATATCAAGTCCTCAAATGTCCTCATCCAAGATAATGAAGCTTGCATTTCTGATTTTGGCTTGACCCCACTCATGAATGTTCCAGCAACCCCCTCCAGAGCTGCAGGTTATCGTGCTCCTGAGGTGATTGAGATGCGTAAACACACTCATAAATCAGATGTGTACAGCTTCGGGGTCCTCCTTCTGGAAATGCTTACTGGGAAAGCACCTATCCAGTCACCGGGCCGTGATGACATGGTTGATCTCCCTAGATGGGTCCACTCTGTTGTTAGGGAGGAATGGACGGCCGAGGTTTTCGATGTGGAGCTGATGAGGTATCAAAACATTGAAGAAGAAATGGTTCAACTGTTGCAAATCGCCATGGCCTGTGTGGCAAAGGTGCCGGATATGCGACCTAGCATGGATGATGTAGTGAGAATGATCGAAGAGATCCGGCAATCTGACTCAGAGAACCGGCCGTCTTCAGAAGAGAATAAATCCAAGGACTCCAATGTGCAGACTCCATAA 1896 0.4515 MKLYSPSLQPCLLVIAILFPLAIADLNSEKQALLTFANAIPHRRNLKWDPSASVCKSWVGITCNPNGTHVISVRLPGIGLVGSIPSNTLGKLDNLKTISLRSNLLSGNLPSDITSLPSLQYLYLQHNNLSGDIPASFSPQLNALDLSYNSFTGVIPETLQNLTELTRLYLQNNSLSGWIPNLNVPKLKLLNLSYNQLNGSIPTALQKFPNSSFEGNSLLCGQPLKPCSSVPPTSPPALPPVAPKRQSSKHVLSKVAIIAIAVGGAVLLLLIAIVILLCCLKKKDDGRSSVIKGKGPSGGRGEKPKEEFGSGVQEPEKNKLVFFEGCSYNFDLEDLLRASAEVLGKGSYGTAYKAVLEESTTVVVKRLKEVVVSKKDFEQQMETVGRVGQHPNVVPLRAYYYSKDEKLLVYDYIPGGNLSSLLHGSRSGGRAPLDWDSRLKVSLGAARGIAHMHSVGGPKFTHGNIKSSNVLIQDNEACISDFGLTPLMNVPATPSRAAGYRAPEVIEMRKHTHKSDVYSFGVLLLEMLTGKAPIQSPGRDDMVDLPRWVHSVVREEWTAEVFDVELMRYQNIEEEMVQLLQIAMACVAKVPDMRPSMDDVVRMIEEIRQSDSENRPSSEENKSKDSNVQTP 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g1343 631 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 413 619 - -
Alju08g1343 631 Gene3D Phosphorylase Kinase; domain 1 305 412 - -
Alju08g1343 631 Pfam Leucine rich repeat N-terminal domain 27 64 IPR013210 -
Alju08g1343 631 Pfam Leucine Rich Repeat 186 208 IPR001611 GO:0005515
Alju08g1343 631 ProSiteProfiles Protein kinase domain profile. 337 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju08g1343 631 Gene3D Ribonuclease Inhibitor 183 228 IPR032675 -
Alju08g1343 631 ProSitePatterns Protein kinases ATP-binding region signature. 343 365 IPR017441 GO:0005524
Alju08g1343 631 Pfam Protein kinase domain 340 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju08g1343 631 PANTHER OS05G0588300 PROTEIN 13 619 - -
Alju08g1343 631 Pfam Leucine rich repeat 136 175 IPR001611 GO:0005515
Alju08g1343 631 Pfam Leucine rich repeat 83 129 IPR001611 GO:0005515
Alju08g1343 631 SUPERFAMILY Protein kinase-like (PK-like) 341 614 IPR011009 -
Alju08g1343 631 Gene3D Transferase(Phosphotransferase) domain 1 413 630 - -
Alju08g1343 631 SUPERFAMILY L domain-like 39 227 - -
Alju08g1343 631 FunFam Leucine-rich repeat receptor-like protein kinase 139 227 - -
Alju08g1343 631 MobiDBLite consensus disorder prediction 606 631 - -
Alju08g1343 631 MobiDBLite consensus disorder prediction 287 312 - -
Alju08g1343 631 MobiDBLite consensus disorder prediction 606 622 - -
Alju08g1343 631 FunFam pollen receptor-like kinase 1 305 412 - -
Alju08g1343 631 Gene3D Ribonuclease Inhibitor 25 182 IPR032675 -
Alju08g1343 631 FunFam Leucine-rich repeat receptor-like protein kinase 28 138 - -
Alju08g1343 631 MobiDBLite consensus disorder prediction 298 312 - -
Alju08g1343 631 CDD STKc_IRAK 343 607 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g1343 Alju-ChrAlju08 10298952 10301616 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g1343 12 629 Receptor kinase-like Gene Family AT5G58300 70.064 0.0 863
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Alju08g1343 Pkinase 1.1e-36 CL0016