Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g1340 ATGGCCCTTCACTCTAATCATCCCCATCCTCAACCACCTGAGGATTTCCCAGAAACATGCACAACCACCCATCCAAGGCTCCTCCGAATCATACTCACTGATCACGACGTCACCGATTCCGACTCCGACTCCGACTCTTCCCTCCGTGATTCATCCAGAGTCAAGCGCCTCATCACCCACATCTCCCTTCATCTTCCCTCCCCCGATTCTCCCCGCACTCCCCCCAAAACCAACCCCACCCGATTCAGGCGGCCCGCCGTTTCCTCCTCCTCTCGCCGCCATAACAAGTTCAGAGGCGTTCGCCAGAGACCTTGGGGTCGCTGGGCCGCCGAGATCCGGGACCCGAACCGAGGCAAACGGGTCTGGCTTGGAACCTTCGACACGGCGGAGCAAGCCGCGTCTGAGTACGACAGGGCAGCTCTGAAGATCAAGGGTCCTGACGCGGTCATCAACTTCCCTTCCTCCTTCATTACGGAGGACACGGCGACGCCGGAAGCCGCCGCGGATGAAAGTCCCAGCACTGATGGATCGGTTTCGTACTCCGACACGGCGGCGTCGCCCACGTCTGTTCTTCCCTGTGATGGAGATTCGACGGCGTTCGGCGATTTCTGTTACGGCGATGTGGATGCGTTTGGGTTCGACATAGACGGGCCGCTGGGTTTGCCGGATGTGAACTTGATGATGTCGAGTCAGCCGTTTCGCAAGGAGGAGTTCGGCGAGTTTGACCTCGATGACTTCTTGACGTGGCCCAACTAA 756 0.5886 MALHSNHPHPQPPEDFPETCTTTHPRLLRIILTDHDVTDSDSDSDSSLRDSSRVKRLITHISLHLPSPDSPRTPPKTNPTRFRRPAVSSSSRRHNKFRGVRQRPWGRWAAEIRDPNRGKRVWLGTFDTAEQAASEYDRAALKIKGPDAVINFPSSFITEDTATPEAAADESPSTDGSVSYSDTAASPTSVLPCDGDSTAFGDFCYGDVDAFGFDIDGPLGLPDVNLMMSSQPFRKEEFGEFDLDDFLTWPN 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g1340 251 CDD AP2 96 155 IPR001471 GO:0003700|GO:0006355
Alju08g1340 251 PRINTS Ethylene responsive element binding protein signature 119 135 IPR001471 GO:0003700|GO:0006355
Alju08g1340 251 PRINTS Ethylene responsive element binding protein signature 97 108 IPR001471 GO:0003700|GO:0006355
Alju08g1340 251 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 24 191 - -
Alju08g1340 251 PIRSF PTI6 11 251 IPR017392 GO:0003700
Alju08g1340 251 MobiDBLite consensus disorder prediction 161 187 - -
Alju08g1340 251 MobiDBLite consensus disorder prediction 1 21 - -
Alju08g1340 251 FunFam Ethylene-responsive transcription factor 2 95 154 - -
Alju08g1340 251 Pfam AP2 domain 96 145 IPR001471 GO:0003700|GO:0006355
Alju08g1340 251 Gene3D AP2/ERF domain 95 154 IPR036955 GO:0003700|GO:0006355
Alju08g1340 251 SUPERFAMILY DNA-binding domain 96 155 IPR016177 GO:0003677
Alju08g1340 251 MobiDBLite consensus disorder prediction 64 100 - -
Alju08g1340 251 ProSiteProfiles AP2/ERF domain profile. 96 153 IPR001471 GO:0003700|GO:0006355
Alju08g1340 251 SMART rav1_2 96 159 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g1340 Alju-ChrAlju08 10286120 10286875 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g1340 18 191 AP2-EREBP Transcription Factor Family AT4G27950 41.799 2.13e-37 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Alju08g1340 AP2 1.2e-15 CL0081