Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g1338 ATGGCAGATGAAGCATGTAATGGTCTTGCGGCAATCTTGGAAAATGAAAAACGTAATGATATGAAAGAGGAGGGCGGTGAAGAAATTCCTCTGTCTGATCCCTTGTCTAAGAAGAAAAAGAACATTTTGATGCAAGATCCTGATGGTGGTTGCTCCACTGAGGAGCTCCAACTGCAAAATCATGCTGCTAACTCTTCTAAGGTGTGTAAAACAAGGCAGAAACCCCGACAAAAGCTCGTCAGAATTATAGTAACTGACCCTGATGCTACTGATACTGACTCTTGCACTGGTGAAGATGCACGGGGAGGGGATAGGCAAGTGACGCAGATCTGCATTGACATTCCCTCAGATTCTGCCTCGTCTTTTGGCTGTACTCCGTTTCCAACCAAGGAAGACCCGACCCACATTGATAAACCAAAGAAATCATCCAACAATGGTGACTCAGCTGGTGGCCACAAGAAGTACAGGGGTGTTCGACGTAGGAAATGGGGTCGGTGGGCTGCTGAAATCCGAGACCCAGTTAATCGTAAAAGGCTCTGGCTTGGAACCTTTGACACTGCAGAGGAAGCTGCGTTAGAGTATGACAAGGCTGCCGTGAAGCTGAGGGGTCTTGATGCCGTCACAAACTTCCCTCAGTCTGTGACAAAGAAGGTGAAGCCTTCCACCATCCGTGACAGCTCAAGCAGTGACAGTTTTAACTCGTTCAGTGCAGCACTGGCATCCCCAACCTCTGTGCTGTCTTAG 744 0.4825 MADEACNGLAAILENEKRNDMKEEGGEEIPLSDPLSKKKKNILMQDPDGGCSTEELQLQNHAANSSKVCKTRQKPRQKLVRIIVTDPDATDTDSCTGEDARGGDRQVTQICIDIPSDSASSFGCTPFPTKEDPTHIDKPKKSSNNGDSAGGHKKYRGVRRRKWGRWAAEIRDPVNRKRLWLGTFDTAEEAALEYDKAAVKLRGLDAVTNFPQSVTKKVKPSTIRDSSSSDSFNSFSAALASPTSVLS 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g1338 247 FunFam Ethylene-responsive transcription factor 2 153 212 - -
Alju08g1338 247 PRINTS Ethylene responsive element binding protein signature 177 193 IPR001471 GO:0003700|GO:0006355
Alju08g1338 247 PRINTS Ethylene responsive element binding protein signature 155 166 IPR001471 GO:0003700|GO:0006355
Alju08g1338 247 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 76 246 - -
Alju08g1338 247 MobiDBLite consensus disorder prediction 122 158 - -
Alju08g1338 247 Gene3D AP2/ERF domain 153 213 IPR036955 GO:0003700|GO:0006355
Alju08g1338 247 CDD AP2 153 213 IPR001471 GO:0003700|GO:0006355
Alju08g1338 247 ProSiteProfiles AP2/ERF domain profile. 154 211 IPR001471 GO:0003700|GO:0006355
Alju08g1338 247 SMART rav1_2 154 217 IPR001471 GO:0003700|GO:0006355
Alju08g1338 247 SUPERFAMILY DNA-binding domain 154 213 IPR016177 GO:0003677
Alju08g1338 247 Pfam AP2 domain 154 203 IPR001471 GO:0003700|GO:0006355
Alju08g1338 247 MobiDBLite consensus disorder prediction 214 247 - -
Alju08g1338 247 MobiDBLite consensus disorder prediction 15 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g1338 Alju-ChrAlju08 10266867 10267823 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g1338 58 247 AP2-EREBP Transcription Factor Family AT4G27950 42.647 1.12e-34 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Alju08g1338 AP2 3.8e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju08g1338 08 10266867 10267823 Alju07g0875 07 23097580 23100576 CCT
Alju08g1338 08 10266867 10267823 Alju08g1338 08 10266867 10267823 ECH