LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju08g1334	ATGTCGTATGTTCCTCCGCACCTTAGGAGCTCCAGCTCCACTACTGTTGCTGCCAGAATTTCATCTCTCGCCCTAGACAACAACGATCACAGCAAGCTTGCCAATTCCCACTTCCACACTTCTCCCCCTCCTCTTTCCTCCTCCAGCTTCTCCAATTCCTCTCGCCGGAGCTCCGGAGCTCCTCCTCTATCCCGCACTCTCTCGGCCCCTGACCCCGTGTTCCCTCACTGGCAGCCGTCTGAACGCGTTTCTCGCATGAAGCCAGAGCAGATTGAAGAGGTTCGACTGCGACTTAATCTTGATGTTTCTGTTGCTTCTGACTCTCTTCCTGCACCTGCACCAATAGAATCATTTTCAGACATGTGCTTGCACCAAAGTATCATGAAGGATATTGCATATCATGAATACACAAGGCCAACTTCTATCCAGGCTCAAGCCATGCCTATCGCTCTTAGCGGAAGGGATCTGTTGGGTTGTGCTGAAACTGGTAGTGGAAAAACTGCAGCTTTCACCATTCCTATGATAGAGCATTGCTTGGCTCAACCACCAATTCGGCGTGGTGATGGTCCTTTAGCATTGGTTTTGGCTCCTACTAGAGAGCTTGCTCAACAAATAGAGAAAGAGGTTAAAGCTTTTAGCAGATCACTTGAATCATTAAAAACTGCTATAGTTGTAGGTGGAACCAACATTGAAAAGCAGAGATCTGAGCTACGAGCAGGAGTTGACATAGTGGTTGCTACCCCTGGAAGATTCATCGATCATTTACAACAAGGCAATACTTCCCTTTCTAGAATTTCCTTTGTTGTTCTAGATGAGGCAGATAGGATGCTTGATATGGGTTTTGAACCACAGATAAGAGAGGTCATGAGAAATCTTCCGGAGAAGCATCAAACATTGTTATTTAGTGCAACCATGCCTGTGGAGATTGAAGCATTAGCAAAGGAGTACTTGGCAAGTCCGGTGCAAGTGAAGGTAGGGAAAGTGAGTAGCCCAACAGCAAACGTTTGTCAAACTCTTGTGAAGGTTTTGGAAAATGAGAAGATTGACCGGCTTCTGGATATGCTTGTTGAGGAGGCGTCACAGGCTGAAAAATTCAGTCGTCCATTTCCATTAACAATTGTGTTTGTGGAAAGAAAGACAAGGTGTGATGAAATTGCTGAAGCATTGGTAGCCCAAGGTTTATCTGCTGTTTCTCTTCATGGTGGCCGTAGTCAGAATGAAAGAGAGGCTGCTTTGCATGATTTTCGAAGTGGCTCCACTAACATTTTGGTTGCAACTGATGTTGCATCTCGTGGCTTGGATGTCACAGGAGTGTCACATGTCGTCAATTTAGATCTTCCGAAGACCATGGAAGATTATGTACACCGGATTGGCAGGACAGGGCGTGCAGGATCAACAGGCCAGGCGACTTCTTTTTACACTGATCGTGATATGTTCCTTGTTGCAAATATAAGGAAGGCTATAGCGGATGCCGGGTCTGGGAATGCTGTGGCTTTTGCAACTGGGAAGGTTGCTAGAAGGAAGGAGAAAGAGGCGGTAGCTGCCCAAAAAGAGGCAAAGATAGCATTGTCCAAGAACTTGTCTTTCGGAGCTGACTCAATCGCTATTGAGGATAAGTATAGGTTCATGATTGCCGCATCGAATATGAAAAGAGAGGGAGCAGCAGATAGTGCTTGGGATGATTGA	1686	0.4632	MSYVPPHLRSSSSTTVAARISSLALDNNDHSKLANSHFHTSPPPLSSSSFSNSSRRSSGAPPLSRTLSAPDPVFPHWQPSERVSRMKPEQIEEVRLRLNLDVSVASDSLPAPAPIESFSDMCLHQSIMKDIAYHEYTRPTSIQAQAMPIALSGRDLLGCAETGSGKTAAFTIPMIEHCLAQPPIRRGDGPLALVLAPTRELAQQIEKEVKAFSRSLESLKTAIVVGGTNIEKQRSELRAGVDIVVATPGRFIDHLQQGNTSLSRISFVVLDEADRMLDMGFEPQIREVMRNLPEKHQTLLFSATMPVEIEALAKEYLASPVQVKVGKVSSPTANVCQTLVKVLENEKIDRLLDMLVEEASQAEKFSRPFPLTIVFVERKTRCDEIAEALVAQGLSAVSLHGGRSQNEREAALHDFRSGSTNILVATDVASRGLDVTGVSHVVNLDLPKTMEDYVHRIGRTGRAGSTGQATSFYTDRDMFLVANIRKAIADAGSGNAVAFATGKVARRKEKEAVAAQKEAKIALSKNLSFGADSIAIEDKYRFMIAASNMKREGAADSAWDD	561

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju08g1334	561	MobiDBLite	consensus disorder prediction	30	64	-	-
	Alju08g1334	561	Pfam	DEAD/DEAH box helicase	140	310	IPR011545	GO:0003676\|GO:0005524
	Alju08g1334	561	MobiDBLite	consensus disorder prediction	30	86	-	-
	Alju08g1334	561	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	347	505	IPR001650	-
	Alju08g1334	561	Coils	Coil	202	222	-	-
	Alju08g1334	561	Gene3D	-	329	523	IPR027417	-
	Alju08g1334	561	Pfam	Helicase conserved C-terminal domain	347	464	IPR001650	-
	Alju08g1334	561	SMART	ultradead3	135	340	IPR014001	-
	Alju08g1334	561	PANTHER	ATP-DEPENDENT RNA HELICASE RHLE-RELATED	105	495	-	-
	Alju08g1334	561	SMART	helicmild6	383	464	IPR001650	-
	Alju08g1334	561	CDD	DEADc	127	324	-	-
	Alju08g1334	561	Gene3D	-	76	327	IPR027417	-
	Alju08g1334	561	Coils	Coil	505	525	-	-
	Alju08g1334	561	ProSitePatterns	DEAD-box subfamily ATP-dependent helicases signature.	269	277	IPR000629	-
	Alju08g1334	561	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	188	484	IPR027417	-
	Alju08g1334	561	CDD	SF2_C_DEAD	337	473	-	-
	Alju08g1334	561	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	116	144	IPR014014	GO:0003724
	Alju08g1334	561	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	147	323	IPR014001	-
	Alju08g1334	561	FunFam	probable ATP-dependent RNA helicase DDX17	76	326	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju08g1334	Alju-ChrAlju08	10238274	10245039	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju08g1334	116	477	Eukaryotic Initiation Factors Gene Family	AT3G13920	36.339	2.20e-68	225

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Alju08g1334	08	10238274	10245039	Alju08g1334	08	10238274	10245039	ECH