Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g1330 ATGCTTAAACACGTATTACCTATTGGCATGGAGCAGAGCTGCGGGGCCCAGATAAGACTCGGGGTTCCACCAGTAGCTAGGGCAGGATGTGCTACAGCACGCACACAATATGCATTCGTACATTCCGTCAAGCTTAGCCCTACCCTTCTTGCTCTGAGGCAAATGAGTGATCGTGGTTTCAGAGCCCGCAGGGATCTTGGTCAAGCAAGCCAAGCCATTGCAGCCATCAATGTTCATGGAATAGGAGCCGCAGATTCCCTCTCGGCAGGACCTGCGGAAAGTGAGGGTGGGATCGATCTCGTTCTTGATTTTGATCAAGGCGTCGAGGACCATGGGCCCACATTGTTGGAGATTGATCTGGTACTCCTGAAGCTGAGTGAAATTTCGTGTTTGAGGGGTTTGGTTCCAGAGATTTGCGTGGGTAAGGAAGAGATATTCTGTGGTTCAGAGAGTGATTTGTTTTTTAAATTTATGGGGTCCGAGGTCTGTGTTGGTGTATCTGGTGGGTCCGCCACTTCTCATGAATGGAAAAAGGGGTGGCTTCTTCCATATGGTGGATTTGCTCAATATTGTAACAACTGCGGAATTTCAACCGAATGCAAGCTTGACACTCTTGATTCCATATCTGCCAATGAGGCATCCATTTTCTGTAGTAAATTCCACCGTGAAGAAACTGGTTGGAGGGATTGCAGCTTTTGCAACAAGCCTATCCACAGTGGATGCATAGTATCTAGGCATTTATTCAACTACCTTGACTTTGGAGGTATAGGTTGCATCAGCTGCATAAAGGCTTCTCAATCGCGTTTGAACACTAAAGAACCTAATGGGGCTGTTACATCTACCATGACAAATGCAAGTGATTGTCCCCCTCTTCATATTGATGGGAAACGGTTGGTGGATAGTGTTGATGAAGGAAAACTGATGCAGTTATGCAGAATTGTCGAAGCTAGTGGGACTAATGGTTGGCATCAGCCTCAGAGAGATAAAATGATTTCATCTAGTGGGTCAAAGAGCCAAAATATTAAGTGCCTAACAGGGGATATGGATTCAAGATTTTCAAATATGATTGCACCATGTATTCAGTCATTAAAATTTCGTTTATTAGAAAATAGTAGACCAAAGTGGGAGATTAAAAATATTTGTGAACCACTCACACAACCATCTTTGAGTATGTCCCTGGGAATTCCATCAGGAAACTCTGCCCCTGCTTCTGCTGGCGAGATTGTAGAAGAAAGGCTTGAGGGCAAACCATCTTCTCTGTTTCATCAAGGGCAAAGATCTCATCCTGTATTCGCTAAACCATCAAAGACTGGTCTTTCCATGAACATAGAAACAAATAAAGGAATGAATTCTATTTCGAAGGCACGTGTTGGCCGGCCACCTGTTGAAGGAAGGGGCAAGAGTCAGCTACTTCCTCGGTACTGGCCTAGGTATACTGATGAAGAGCTGAAGCAATTGTCTGGAAATTTGAAATCCACTGTAGTGCCATTATTTGAGAAGGTGCTGAGTGCCAGTGATGCAGGTCGAATTGGGCGCCTTGTCCTTCCAAAAGCTTGTGCTGAAGCTTTTTTCCCTCCTATCTGTCAATCAGAAGGTCTTCCTTTGGAAATACTAGACGTGAAGGGGAATGAATGGACATTTCAGTTCAGATATTGGCCTAATAACAACAGCAGGATGTATGTATTGGAGGGTGTGACCCCTTGCATACAGTCAATGCAATTGATTGCGGGTGATACTGTGACATTTAGTAGGATAGATCCTGGGGGCAGACTTATTATGGGTTTCAGAAAGACAGCAATTAGTCTGGAACCACAGGATGCATCTACATCTGGACATTCTAATGGGATTACAATAAGGGAAACAGCCATTTCTGGTGCAACTGAGAACCTGCCCTCAGGAAGTGGTTATTCTGATCTTCTTCAATCTATGGAAGAGAACAGGGAACCTCACTTAAATAGACAGTCAGAACACCTGCATTCGGGTAGCAGGGTGGCTGATTTTACCCAAACGGAAAATTATGGCCAGATGACAAAAAATGATTCACGGCAGCTACCAATTTCAGTTTCAGAGAAGAAAAGGACTCGGAATATTGGGCCTAAGAGTAAGAGGTTGCTCATTAATTGTGAAGATGCTTTGGAGTTGAGACTAACATGGGAGGAAGCACAAGATTTACTTCGTCCACCACCTAGTGTTGAGCCAATCATTGTCACAATTGAGGACCACATTTTTGAGGAGTACAATGAACCCCCAGTTTTTGGGAAGAGAACTATATTCAGTGCCTGCCCATCTGGGGGACAAGAACAATGGGTTTCATGTGATGATTGCTCTAAATGGCGAAAATTGCCTGTAGATGCTCTTTTACCACCTAAGTGGACTTGTTCTAAAAATGTCTGGGATCCAACCAGGTCTTCATGTTCTGCACCGGAGGAGCTAGGACCCAAGGAATTGGAAGATCTTTTGAAATCCAGCAAAGACTTTAAAAAGCGAAGATTAACAGAAAATAATAAGTCACTCCAAGAATTTGAACCTTCAGGCCTTGATGCTCTTGCTAATGTGGCAGTGTTGGGAGATAGTGTCGGAGATCCTTGCGAGTCATCAGCCGGACCCACCACCAAACATCCTAGACATCGTGCCGGCTGCACCTGCATTGTCTGCATTCAGCCACCAAGTGGAAAGGGAAGACATCATTCCACCTGTACTTGCAACGTGTGCATGACTGTGAAAAGGCGGTTCAACACCCTCATGCTGCGTAAGAAGAAACGGCAATCCGATGCTAACCAGATGGATCATAGAGAAGAGTCTGGTATGAATGGAGCACCTAGGGAAGACACAAGTCATGTGGAGAAAGAAGCGAGCATAAAAAGAAGAAAGCTCGAGGCGGGCGAATCCAGTGCTGTGCAGATAGATCTGAATAGCCATCCTGATCGTGAAGACATGCAAGTTAATGCATCAAGCATGAATGGTCATCTTGGAGCTCCAAACTATCCACTTCCTGTATATATGGATCAAAATGGCCCTAATGGAGGTCACGGGTACTTCTCTAATGGGGGAAGCTTTGGACCAGTTATCTGGGAGAAGGAAAGAACAGAAGATAAGGCATCCTGTGATCCCAAATCATGTCAGAACAATCATCCTTGA 3138 0.4481 MLKHVLPIGMEQSCGAQIRLGVPPVARAGCATARTQYAFVHSVKLSPTLLALRQMSDRGFRARRDLGQASQAIAAINVHGIGAADSLSAGPAESEGGIDLVLDFDQGVEDHGPTLLEIDLVLLKLSEISCLRGLVPEICVGKEEIFCGSESDLFFKFMGSEVCVGVSGGSATSHEWKKGWLLPYGGFAQYCNNCGISTECKLDTLDSISANEASIFCSKFHREETGWRDCSFCNKPIHSGCIVSRHLFNYLDFGGIGCISCIKASQSRLNTKEPNGAVTSTMTNASDCPPLHIDGKRLVDSVDEGKLMQLCRIVEASGTNGWHQPQRDKMISSSGSKSQNIKCLTGDMDSRFSNMIAPCIQSLKFRLLENSRPKWEIKNICEPLTQPSLSMSLGIPSGNSAPASAGEIVEERLEGKPSSLFHQGQRSHPVFAKPSKTGLSMNIETNKGMNSISKARVGRPPVEGRGKSQLLPRYWPRYTDEELKQLSGNLKSTVVPLFEKVLSASDAGRIGRLVLPKACAEAFFPPICQSEGLPLEILDVKGNEWTFQFRYWPNNNSRMYVLEGVTPCIQSMQLIAGDTVTFSRIDPGGRLIMGFRKTAISLEPQDASTSGHSNGITIRETAISGATENLPSGSGYSDLLQSMEENREPHLNRQSEHLHSGSRVADFTQTENYGQMTKNDSRQLPISVSEKKRTRNIGPKSKRLLINCEDALELRLTWEEAQDLLRPPPSVEPIIVTIEDHIFEEYNEPPVFGKRTIFSACPSGGQEQWVSCDDCSKWRKLPVDALLPPKWTCSKNVWDPTRSSCSAPEELGPKELEDLLKSSKDFKKRRLTENNKSLQEFEPSGLDALANVAVLGDSVGDPCESSAGPTTKHPRHRAGCTCIVCIQPPSGKGRHHSTCTCNVCMTVKRRFNTLMLRKKKRQSDANQMDHREESGMNGAPREDTSHVEKEASIKRRKLEAGESSAVQIDLNSHPDREDMQVNASSMNGHLGAPNYPLPVYMDQNGPNGGHGYFSNGGSFGPVIWEKERTEDKASCDPKSCQNNHP 1045
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g1330 1045 ProSiteProfiles Zinc finger CW-type profile. 763 813 IPR011124 GO:0008270
Alju08g1330 1045 Gene3D - 476 600 IPR015300 -
Alju08g1330 1045 MobiDBLite consensus disorder prediction 917 962 - -
Alju08g1330 1045 Pfam CW-type Zinc Finger 768 810 IPR011124 GO:0008270
Alju08g1330 1045 FunFam B3 domain-containing transcription repressor VAL1 476 603 - -
Alju08g1330 1045 MobiDBLite consensus disorder prediction 917 965 - -
Alju08g1330 1045 Pfam B3 DNA binding domain 498 596 IPR003340 GO:0003677
Alju08g1330 1045 ProSiteProfiles B3 DNA-binding domain profile. 498 599 IPR003340 GO:0003677
Alju08g1330 1045 SMART B3_2 498 598 IPR003340 GO:0003677
Alju08g1330 1045 Gene3D - 766 821 - -
Alju08g1330 1045 MobiDBLite consensus disorder prediction 419 443 - -
Alju08g1330 1045 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 162 1004 - -
Alju08g1330 1045 CDD B3_DNA 496 597 IPR003340 GO:0003677
Alju08g1330 1045 SUPERFAMILY DNA-binding pseudobarrel domain 496 601 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g1330 Alju-ChrAlju08 10159374 10168840 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g1330 153 983 B3 DNA Binding Superfamily AT2G30470 47.625 0.0 686
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Alju08g1330 B3 3.7e-14 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju08g1330 08 10159374 10168840 Alju07g0860 07 22175795 22184577 CCT
Alju08g1330 08 10159374 10168840 Alju08g1330 08 10159374 10168840 ECH