Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g1204 ATGGCTGAGTGGTTCTCTCTAGGTGCAAAACAACAAGGCCCACAACAAACGAAGGTAGAAAAAGGAAAAGAAGATAACAGCAATTGTCTATTCTTGTTGAGCGAGAAGGAGATCTACAACAACAACAACAACAATAACAAGGGATTCGAGATATGGACACAGTCTTATCATCATCATCATTCAAACCAATCCTTGAGCAACTGCTTCTCTCTTGGGGTGGGTCCTAGTTGTGGAAACTTGTTTGATGAGTCTACAAGGTTTGGACTGACGGTGATGAGGTCTGGAGGGGCTCTAGGAGGAGGAGGCATGAATTGTCAGGATTGTGGGAATCAAGCGAAGAAGGACTGTGCACATCTTAGATGCAGAACTTGCTGTAGAAGTCGAGGGTTTCAGTGCCAAACCCACGTTAAGAGCACTTGGGTCCCCGCCGCCAGACGCCGTGAGCGAGAGCACCAGCACCAGCACCAGGAGCTACAACATCAACGGCAACTTCACGGCGATACCTCCAAACGTCACAGAGAAACTCACGGTGCCGCAGCCACTCAGCTTGCTCGCATTCCTTCACCTATCACCACCACAGGGTTGGAGCTGCGACAATTCCCTCACGAACTGAACTCGCCAGCAATGTTTCAGTGTGTGAGAGTTAACTCAATGGACACACCAGAAGAGCAGTACGCTTATCAAACCGCTGTTAACATCGGAGGGCATGTTTTCAAAGGAATCCTCTACGACCAAGGCCCTGATGCACCTTATAACGCCGGTGGTGATCGGAGCTCCTCCGCCGCAGCTGATGCTGATGATAACCAAAACCTTAACCTCATAACTGCTTCAACCACGTCAGCACCTCCGGCCAGCGCCAACCCGTTTGATCCTTCTTCAATCTACTCTAATATCCCACTTAATACCTTCATGGCTGGTACGCAATTCTTCCCACCACCAAGATCCTAA 948 0.4937 MAEWFSLGAKQQGPQQTKVEKGKEDNSNCLFLLSEKEIYNNNNNNNKGFEIWTQSYHHHHSNQSLSNCFSLGVGPSCGNLFDESTRFGLTVMRSGGALGGGGMNCQDCGNQAKKDCAHLRCRTCCRSRGFQCQTHVKSTWVPAARRREREHQHQHQELQHQRQLHGDTSKRHRETHGAAATQLARIPSPITTTGLELRQFPHELNSPAMFQCVRVNSMDTPEEQYAYQTAVNIGGHVFKGILYDQGPDAPYNAGGDRSSSAAADADDNQNLNLITASTTSAPPASANPFDPSSIYSNIPLNTFMAGTQFFPPPRS 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g1204 315 MobiDBLite consensus disorder prediction 146 181 - -
Alju08g1204 315 NCBIfam LRP1 C-terminal domain 199 247 IPR006511 -
Alju08g1204 315 Pfam Domain of unknown function (DUF702) 102 248 - -
Alju08g1204 315 NCBIfam putative zinc finger domain, LRP1 type 104 146 IPR006510 -
Alju08g1204 315 MobiDBLite consensus disorder prediction 146 178 - -
Alju08g1204 315 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 300 IPR007818 GO:0003700|GO:0006355
Alju08g1204 315 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g1204 Alju-ChrAlju08 9065007 9066599 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g1204 1 315 C2H2 Transcription Factor Family AT1G75520 41.176 2.05e-74 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Alju08g1204 DUF702 8e-62 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju07g2898 07 54068951 54071416 Alju08g1204 08 9065007 9066599 CCT
Alju08g1204 08 9065007 9066599 Alju08g1204 08 9065007 9066599 ECH