Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g1114 ATGGAACCAATCAACAATAATAGATGTTCCTCTTCCACTTCTTCCTCTGACTCTTCCACTTCTGGCTCTTCCTTTTCTAGCAACCCCCATACCAACAACCCCGACAGAATCAAAGGCCCCTGGAGTGCCGAAGAAGACCGCATTCTTACCCGACTCGTTGAACGATACGGGCCCCGAAACTGGTCCTTGATTAGCCGCTACATTAAGGGAAGGTCCGGCAAGTCATGCCGCCTCAGATGGTGTAACCAGCTGAGCCCTACCGTGGAGCACCGTCCCTTTTCCCAACAAGAGGACGACACCATCATTGCCGCTCATGCTCGGTACGGTAACAGGTGGGCCACCATCGCCCGCCTCCTCCAGGGTCGGACCGATAATGCCGTCAAGAACCACTGGAATTCCACGCTCAAGAGGAGGGTGAGGGAGCAGCGTGCGGTGGCGGACGGTGGAGCTGCTGGTGCTGCCCATGAGGGGGTTCTTGGTTCTCCGGGATCTGCGCAGCCCTGCATGGGGTTCGAAATGGAAAATGATGACCCGTTGACGGCGTTGACTCTGGCACCGCCTGGAGCTAACATGGCGGTGGTGGCTGAGCGCCAGCCGAGCTCGGAGAATCTGCCGGCGGGGTTCTGGGATGAGATGAGGGGTGTGATAGCGAGGGAAGTCAGAGACTATGTTTCTTCCACTTTTTCTGAAAACCCAGGATTCCATTGA 708 0.565 MEPINNNRCSSSTSSSDSSTSGSSFSSNPHTNNPDRIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPTVEHRPFSQQEDDTIIAAHARYGNRWATIARLLQGRTDNAVKNHWNSTLKRRVREQRAVADGGAAGAAHEGVLGSPGSAQPCMGFEMENDDPLTALTLAPPGANMAVVAERQPSSENLPAGFWDEMRGVIAREVRDYVSSTFSENPGFH 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g1114 235 SUPERFAMILY Homeodomain-like 35 131 IPR009057 -
Alju08g1114 235 SMART sant 37 86 IPR001005 -
Alju08g1114 235 SMART sant 89 137 IPR001005 -
Alju08g1114 235 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 90 139 IPR017930 -
Alju08g1114 235 MobiDBLite consensus disorder prediction 1 41 - -
Alju08g1114 235 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 33 88 IPR017930 -
Alju08g1114 235 CDD SANT 92 135 IPR001005 -
Alju08g1114 235 Gene3D - 91 148 - -
Alju08g1114 235 Gene3D - 37 89 - -
Alju08g1114 235 PANTHER MYB PROTEIN-RELATED 38 187 - -
Alju08g1114 235 FunFam MYB transcription factor 38 89 - -
Alju08g1114 235 CDD SANT 40 82 IPR001005 -
Alju08g1114 235 ProSiteProfiles Myb-like domain profile. 85 135 IPR001005 -
Alju08g1114 235 MobiDBLite consensus disorder prediction 1 35 - -
Alju08g1114 235 ProSiteProfiles Myb-like domain profile. 33 84 IPR001005 -
Alju08g1114 235 Pfam Myb-like DNA-binding domain 41 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g1114 Alju-ChrAlju08 8347126 8347833 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g1114 27 197 MYB Transcription Factor Family AT4G37260 57.895 1.36e-62 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Alju08g1114 Myb_DNA-bind_6 6e-17 CL0123