Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g1104 ATGCCATCGAACGGTTCTGATTCCCAACAACAACAACAGCCATCGGAGCAGAATCAGCGGCAGCAGCAAGCGCCAACGCAGACGCCGTCGCCAATACAGCCACTGGCGCTGCCACAGCAGTGGATGCCGATACAATACCCTGTGGCGGCGATGGTAATGCAGCATCACATGTTGCCACCCCAGCATTATGGGCCGCCGCCACCTCAGCCCTATATGCCTTACCACCAGTACCAGCAGTTACCGCATGTGACCCACCCTCAACAGCATCAGCATCAGGGATCCACCGGCGATAACAAAACGATCTGGGTCGGCGATTTACATCATTGGATGGATGAGAATTATCTGCATCGCTGCTTCGCATCCACGGGAGAGATTTCCTCCATTAAGGTTATTCGCAACAAGCAGACTGGCCTATCAGAGGGTTATGGATTTGTGGAATTCTATTCCCATGCCACGGCAGAAAACGTTTTACAGAATTACGGTTCCATTTTGATGCCCAATACGGATCAACCCTTTCGCCTGAACTGGGCCACATTTAGCACAGGGGATAAGCGTTCGGATAATGTTCCCGACCTTTCTATTTTTGTAGGAGATTTAGCTGCAGATGTTACAGATAGCATGTTGCATGAAACTTTTGCTAGTAAATATCCTTCTGTTAAAGCTGCAAAAGTTGTTTTTGATGCCAATACTGGTCGTTCAAAGGGTTATGGCTTCGTCAGGTTTGGAGATGATAATGAGAGGTCTCAGGCTATGATTGAAATGAATGGTACGTATTGTTCTAGCAGACCAATGCGTATTGGTGCTGCAACCCCTAGGAAATCATCTGGCTACCAACAAGGAGGCCATGCGTCAAATGGAACATCCAACCAATCTGAAGCTGACTCAACAAACACAACAATATTTGTTGGAGGACTTGACCCTAATGCAACAGATGACGATCTTAGGCAGCCATTCTCCCAGTATGGTGAGATAGTCTCTGTCAAGATACCTGTTGGAAAGGGATGTGGATTTGTACAATTTGCAAACAGGAACAACGCTGAAGAAGCATTGCAGAAGTTAAATGGGACAGTGATTGGCAAGCAAACAGTTCGTCTTTCTTGGGGCCGCAATCCAGCAAATAAGCAGTTTAGAGGGGACTTTGGCAACCACTGGAGCGGGGCGTATTATGGAGGTCCTATTTATGATGGTTATGGATATGCTCTGCCACCACCTCATGACCCAAGAATATATGCTGCTGCTTATGGGTCCTACCCAATGTATGGAGGCCACCAACAACAAGTAAGCTGA 1287 0.4755 MPSNGSDSQQQQQPSEQNQRQQQAPTQTPSPIQPLALPQQWMPIQYPVAAMVMQHHMLPPQHYGPPPPQPYMPYHQYQQLPHVTHPQQHQHQGSTGDNKTIWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAENVLQNYGSILMPNTDQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAADVTDSMLHETFASKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMIEMNGTYCSSRPMRIGAATPRKSSGYQQGGHASNGTSNQSEADSTNTTIFVGGLDPNATDDDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTVIGKQTVRLSWGRNPANKQFRGDFGNHWSGAYYGGPIYDGYGYALPPPHDPRIYAAAYGSYPMYGGHQQQVS 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g1104 428 MobiDBLite consensus disorder prediction 272 304 - -
Alju08g1104 428 CDD RRM3_NGR1_NAM8_like 297 368 - -
Alju08g1104 428 Gene3D - 179 284 IPR012677 -
Alju08g1104 428 CDD RRM2_SECp43_like 191 270 - -
Alju08g1104 428 CDD RRM1_SECp43_like 100 180 - -
Alju08g1104 428 FunFam Polyadenylate-binding protein RBP47 283 400 - -
Alju08g1104 428 MobiDBLite consensus disorder prediction 1 34 - -
Alju08g1104 428 Gene3D - 98 178 IPR012677 -
Alju08g1104 428 Gene3D - 285 400 IPR012677 -
Alju08g1104 428 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 101 163 IPR000504 GO:0003723
Alju08g1104 428 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 194 264 IPR000504 GO:0003723
Alju08g1104 428 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 300 363 IPR000504 GO:0003723
Alju08g1104 428 FunFam Polyadenylate-binding protein RBP47B 98 178 - -
Alju08g1104 428 SUPERFAMILY RNA-binding domain, RBD 97 273 IPR035979 GO:0003676
Alju08g1104 428 SMART rrm1_1 299 366 IPR000504 GO:0003723
Alju08g1104 428 SMART rrm1_1 193 267 IPR000504 GO:0003723
Alju08g1104 428 SMART rrm1_1 100 175 IPR000504 GO:0003723
Alju08g1104 428 MobiDBLite consensus disorder prediction 263 306 - -
Alju08g1104 428 SUPERFAMILY RNA-binding domain, RBD 287 398 IPR035979 GO:0003676
Alju08g1104 428 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 298 370 IPR000504 GO:0003723
Alju08g1104 428 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 99 179 IPR000504 GO:0003723
Alju08g1104 428 FunFam Polyadenylate-binding protein RBP47B 180 282 - -
Alju08g1104 428 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 90 374 - -
Alju08g1104 428 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 192 271 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g1104 Alju-ChrAlju08 8249829 8254384 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g1104 101 377 Eukaryotic Initiation Factors Gene Family AT4G34110 27.915 2.47e-27 112
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju08g1104 08 8249829 8254384 Alju08g1104 08 8249829 8254384 ECH