Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g1072 ATGCCGCGTGTCTGTAGTGGCATATCTAACGGCGAAAGTTCACCCACCGCCAACGAGGACCACCACCGACTCATTTATAAGGATCTCCTATCATTTCTGACATCTGGCACGTGCGTGGTCTTCTCCCTTCAGCAAGACGAAGAGAAAAGGAACGCTAATGTTACGCCAACGTTGGTTAACCATCTCACGCTCACCTCCTATCTTTCCAACGCCGTTATAGTAGTAGTGCATGCATACACCGTACCTCAACACTCAACTAATATCTATAGCTCATCTCCGTCACCGTCAATTTCAACGGCACATGTGGCTTCCCTGCCTATGACTCTGGAGTCTGACCACATCATAATGCAGTTTGACATGGAAGGTGGCACTAGTGATGAGCTAAAGTGGTCATTCTCATGGGCGTCGCATGATGATGAGATGAACTTGACGGCCCAGCCTCCCCAATTTTCAGGAGCTTACGCGGACGATTATGAAGGGACAGGCTTGCCTGTGCCACCACCTGAGCTCTGTGGAACAACCCCTACAATCCACAAACCTAACTATTGGTGGTCGCTCGAGACTACAAGTACAACAACGTCTCTGGGGAACCCTGCGCCACAACAACAAGAGTATCAAGCCTTGGCCTTGTCGGAGAGAGGGAAGAACACGATGATGAGGGAGATGATATTTAGGATAGCGGCGATGCAGCCGATACAGATAGATGCAGAGTCAGTGAAGCCTCCCAAGAGGAGGAACGTGAAGATATCAAAGGACCCTCAAAGCGTGGCGGCTCGCCGTCGCAGAGAAAGAATCAGCGAGAGAATTAGGATATTGCAGAGATTGGTGCCAGGTGGCACTAAAATGGACACGGCCTCTATGTTAGATGAAGCTATTCACTACCTCAAATTCTTGCAGTCCCAGGTTCACTCCCTCCAACGAGCTGCCTCACATAATAACCGACCCCCTCATCTCTTCATGCTCTCTCGCGCCAATCCTTCCTCTAATTTTCTTTCTCTGCACGAACCTCCCCAACCTCCTTATAACCCTCACCATTTCTGCTGA 1044 0.499 MPRVCSGISNGESSPTANEDHHRLIYKDLLSFLTSGTCVVFSLQQDEEKRNANVTPTLVNHLTLTSYLSNAVIVVVHAYTVPQHSTNIYSSSPSPSISTAHVASLPMTLESDHIIMQFDMEGGTSDELKWSFSWASHDDEMNLTAQPPQFSGAYADDYEGTGLPVPPPELCGTTPTIHKPNYWWSLETTSTTTSLGNPAPQQQEYQALALSERGKNTMMREMIFRIAAMQPIQIDAESVKPPKRRNVKISKDPQSVAARRRRERISERIRILQRLVPGGTKMDTASMLDEAIHYLKFLQSQVHSLQRAASHNNRPPHLFMLSRANPSSNFLSLHEPPQPPYNPHHFC 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g1072 347 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 253 317 IPR036638 GO:0046983
Alju08g1072 347 Gene3D - 248 315 IPR036638 GO:0046983
Alju08g1072 347 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 100 329 IPR045843 GO:0003700|GO:0006355
Alju08g1072 347 SMART finulus 255 304 IPR011598 GO:0046983
Alju08g1072 347 Pfam Helix-loop-helix DNA-binding domain 258 299 IPR011598 GO:0046983
Alju08g1072 347 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 249 298 IPR011598 GO:0046983
Alju08g1072 347 FunFam BHLH transcription factor 252 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g1072 Alju-ChrAlju08 8064727 8066266 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g1072 219 309 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G67060 85.714 2.88e-39 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Alju08g1072 HLH 4.3e-08 No_clan