Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g1071 ATGGCTTTTCTGCTGGACAATTGCGACGGCATATTACTCTCCCTCGACTCTCACAAGTCGGTGCCAGCTCCCTTCCTCACCAAGACCTACCAGCTCGTGGATGATCCCGCCACCGATCACATCGTCTCCTGGGGTGAAGACGACACCACCTTCGTCGTCTGGCGTCCCCCTGAGTTTGCTCGCGATCTCCTCCCCAACTACTTCAAGCACAACAACTTCTCCAGCTTCGTTCGGCAGCTCAACACCTACGGTTTCAGAAAGATTGTGCCGGACAGATGGGAGTTTGCCAATGAATTCTTTAAGAAGGGGGAGAAGCACTTGCTATGCGAGATCCACCGCAGGAAAACGGTCCAGCCTCATCATCATCATCAGAACCACCACAGTGTTGGCGTCGGCGGCGTCAACGTCCCGGCGGCTTTCTTTCCGTTTCCTTCCAGGCTCAGCATCTCTCCTCCCAGCGACTCCGACGACCAGTACAATAATTGGTGTGATTCACCGCCGCCCCTCACTTCTCCGGCGGCTCCTGTTTCTTCCCTCATCAACGGCGCCGCCAACTACAACTCCTCCTTCACCGCCCTTTCCGAGGACAACGAGAGGCTCAGACGAAGCAACAACATGCTCATGTCCGAGCTCACCCACATGAAGAAGCTTTATAACGACATCATCTACTTCGTCCAGAACCATGTCAAACCAGTCCCTCCCAGTAATTCATACCCTTCCTCTTTGCTTTCTCCGCCCATGACCGCCACTACTACTAATACTCCCTTAATGCAAAGGCCTTTGAACCATCTTTTGGGGTATTATTCCACGAATAACAAGCAAACTCATCCTCTCATGAACTCGCCCACCAACACATCAAAGAGCTCCATTACCATACTTGAAGAGCCAAGTAGTAACAGCTGTAAGACCAAGCTCTTTGGTGTGTCTCTTCAATCTAAGAAAAGAGTGCATCCTGAGTATGGTTTTAATCCCACAAGTTTATCCGACGCTAGTAAGGCTCGTTTCGCTATGGAAAAAGATGACTTGGGCTTGAATCTCATGCCTCCTTCGACTTGTTAG 1059 0.5109 MAFLLDNCDGILLSLDSHKSVPAPFLTKTYQLVDDPATDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKKGEKHLLCEIHRRKTVQPHHHHQNHHSVGVGGVNVPAAFFPFPSRLSISPPSDSDDQYNNWCDSPPPLTSPAAPVSSLINGAANYNSSFTALSEDNERLRRSNNMLMSELTHMKKLYNDIIYFVQNHVKPVPPSNSYPSSLLSPPMTATTTNTPLMQRPLNHLLGYYSTNNKQTHPLMNSPTNTSKSSITILEEPSSNSCKTKLFGVSLQSKKRVHPEYGFNPTSLSDASKARFAMEKDDLGLNLMPPSTC 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g1071 352 Gene3D - 17 116 IPR036388 -
Alju08g1071 352 SMART hsfneu3 21 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Alju08g1071 352 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 18 282 IPR027725 -
Alju08g1071 352 SUPERFAMILY "Winged helix" DNA-binding domain 22 114 IPR036390 -
Alju08g1071 352 Pfam HSF-type DNA-binding 25 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Alju08g1071 352 ProSitePatterns HSF-type DNA-binding domain signature. 64 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Alju08g1071 352 FunFam Heat stress transcription factor B-4 17 115 - -
Alju08g1071 352 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Alju08g1071 352 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Alju08g1071 352 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g1071 Alju-ChrAlju08 8058860 8060053 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g1071 19 351 HSF AT1G46264 59.366 4.09e-117 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Alju08g1071 HSF_DNA-bind 2.7e-32 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju07g1900 07 45278519 45279708 Alju08g1071 08 8058860 8060053 CCT
Alju08g1071 08 8058860 8060053 Alju08g1071 08 8058860 8060053 ECH