Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g1061 ATGCAAGGGACAAGGGGTAGGATAGGTTCCTTTCCTGAAACATTGGAATTTGATTGTGGTTCTACTTCAAGTAATGCTACTGGGGATCAGCAGCAGATTTGCTGGGATGGTATGAGGAACCCTGTGGAAAATCAAATGCCTCCATTTATACTTTCACCTGGTGGTATCAACCCATTGTATGCAAATTCAATTGACCATGAATGGAAGAGCATGAATAATTGGAGAATTGGTGAGCCAAGTTCCAGTGGTTCACATATTCAAATTAACAATGATGAGCAGAAAAGAGAATTTGGATGGTCATCTTCTACCAGTGCTGATGCTGTTGTTGGTTCAAGATTAGAGCGACACTTTGACTCAACCAATTTACTTTCATTTGACAACGTCAATATGAGTCCTTTGTGTATGAACAACTCCAATCCTCATTCTGTAACACAGAATACTAACCTCAATGCCAGTTCAGCGGACACAGGCTGTAATATGGGGCAACATCTTGAGCATCCTGTCTTGAGCAAATCAAATGGATCAGTAAATGAGCTTATCCCACCTACTACTGGTTCTGTGCCCTTTGCTCATCCTTCTGGAAGTAACATGGTAGATAATGGTAGTGTTAGGCCAGGGTGTTCTCTTGATGCCCGGCGTGTATCTTGTAAAAGAAAGGCTGTTGAAGGATATGTTGGACAATCTTCAGGTGGTGAAAGTTCCAGCTGCAGCCAGTATACAGAAAGCAGGGCTTGGCATACCCTTCCTACTCACAGTAATTCTCGGAGCAGTTTAAGCAGATCTGCTTCATCAGCACAGATAAGTTCAAGAGTTGGCCTGGATGTAGGCTATGAAGTGGGGGATGAATCTTCAGAGAGCATTAATAATTTAAATGTTGCAGCGAGCTCAAATAGCTTCCTCAGGAATTCCCGTTTGAGGATAAATCCTTCAAACGAACAGGATTCCATTCCTTATGTTGCATTCTCAAATGGCAGTGTAACTAGGCGTTCCACAATTCCTTCATCATCTCCTATGACACACAGTTTTCGTCCTGTTGGTAATTCTCTGGATTTGGGGTCAGCACCATCTGCAGATGATATGGTTCCTCAAACCCAGCCCCTTGGAAATTGTTCTCCTTCTATACACAGGAATATGGCACCATTTAGGTGGAGTGGCAGCTCTAACTTGAGAAATAGCCATTTGTCAAGCTCAATGATTTGGTCAGACAGGGATAATCTATTGCATGAAGAAGGAAGATCTAGAAGCATGTTTGAACATCCAATGTTTGTGCCAGTTACTGATTTAAGAAATTCAGTTCGAAATCCAACCAACAGAGCTTCAAGTAATGCAAATTTAAATATATCAGGAAATGTCACTTCCTCACTGCATGCTGGGTTAAGTTCAGGCATCAGTTCGCCACCTGCTCCATCATGGGTTTCTCATCCCAATCCTCTACATCATCCACGGAGGTTATCTGATTATGCTCGTAGATCATTGTTGTCTTCTGTTTCTGAGGCTGCTGCAGGTTTCAACAATAGCAATTCTTTCTTGCACTCTGCTCCCATTGCTTCATCTGAAGCAAGGGCACCATCATCTCGAGCTGGTAGTCGAGGACGTAATCAGTCACACTCAAGATCACCATGGGTGGAGAGGCGAGTTGATAGTAACTTCAGACTTCCTTATTCATTGCAAACTCTGGCTGTTGCCAGTGAAGGAAGTAGTAGACTATCTGAGCTCCGCAGTGTTTTGGGCCTCATGCGTAGGGGAGGGAACCTTCGGTTTGAGGATTTTATGATCTTTGACCATTCAGTATTTTCTGGAATGGCTGATATTCACGACCGACACAGGGACATGCGACTTGACGTAGATAACATGTCTTATGAGGAGTTATTGGCTCTGGAAGAACGGATTGGAAATGTGAGTACTGGATTGAGCGAGGAAACTATATTGAAACTACTAAAACAGAGGAAGTGTTCAGTTGAAGAAGGGTCTCAATGTGAGGCAGAACCCTGCTGTGTGTGTCAGGAAGAGTTTGACAACGGAGATGACGTTGGAACACTCGATTGTGGCCATGATTACCATACCAACTGCATCAAACAGTGGCTAATGCAGAAGAATATGTGCCCGATTTGCAAGACAACAGGCTTGGCAACGTGA 2136 0.4349 MQGTRGRIGSFPETLEFDCGSTSSNATGDQQQICWDGMRNPVENQMPPFILSPGGINPLYANSIDHEWKSMNNWRIGEPSSSGSHIQINNDEQKREFGWSSSTSADAVVGSRLERHFDSTNLLSFDNVNMSPLCMNNSNPHSVTQNTNLNASSADTGCNMGQHLEHPVLSKSNGSVNELIPPTTGSVPFAHPSGSNMVDNGSVRPGCSLDARRVSCKRKAVEGYVGQSSGGESSSCSQYTESRAWHTLPTHSNSRSSLSRSASSAQISSRVGLDVGYEVGDESSESINNLNVAASSNSFLRNSRLRINPSNEQDSIPYVAFSNGSVTRRSTIPSSSPMTHSFRPVGNSLDLGSAPSADDMVPQTQPLGNCSPSIHRNMAPFRWSGSSNLRNSHLSSSMIWSDRDNLLHEEGRSRSMFEHPMFVPVTDLRNSVRNPTNRASSNANLNISGNVTSSLHAGLSSGISSPPAPSWVSHPNPLHHPRRLSDYARRSLLSSVSEAAAGFNNSNSFLHSAPIASSEARAPSSRAGSRGRNQSHSRSPWVERRVDSNFRLPYSLQTLAVASEGSSRLSELRSVLGLMRRGGNLRFEDFMIFDHSVFSGMADIHDRHRDMRLDVDNMSYEELLALEERIGNVSTGLSEETILKLLKQRKCSVEEGSQCEAEPCCVCQEEFDNGDDVGTLDCGHDYHTNCIKQWLMQKNMCPICKTTGLAT 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g1061 711 Pfam Ring finger domain 664 705 IPR001841 -
Alju08g1061 711 ProSiteProfiles Zinc finger RING-type profile. 664 705 IPR001841 -
Alju08g1061 711 MobiDBLite consensus disorder prediction 457 477 - -
Alju08g1061 711 FunFam E3 ubiquitin-protein ligase MBR2 632 709 - -
Alju08g1061 711 MobiDBLite consensus disorder prediction 520 536 - -
Alju08g1061 711 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 627 708 IPR013083 -
Alju08g1061 711 SMART ring_2 664 704 IPR001841 -
Alju08g1061 711 MobiDBLite consensus disorder prediction 1 29 - -
Alju08g1061 711 MobiDBLite consensus disorder prediction 520 542 - -
Alju08g1061 711 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 157 709 IPR045191 GO:0061630
Alju08g1061 711 SUPERFAMILY RING/U-box 653 707 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g1061 Alju-ChrAlju08 7988203 7991470 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g1061 1 711 C3H Transcription Factor Family AT2G15530 32.411 1.84e-80 269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju07g1907 07 45332783 45336351 Alju08g1061 08 7988203 7991470 CCT
Alju08g1061 08 7988203 7991470 Alju08g1061 08 7988203 7991470 ECH